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run: Support unmanaged pathogen repositories with local paths #476

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Merged
tsibley merged 2 commits into from
Sep 23, 2025

run: Explicit pass --directory to Snakemake to override "workdir:" di…

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run: Support unmanaged pathogen repositories with local paths #476

run: Explicit pass --directory to Snakemake to override "workdir:" di…
acd485d
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