Skip to content

include zenodo atlas record #152

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
neuronflow merged 4 commits into from
Aug 19, 2025
Merged

include zenodo atlas record #152

Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
59499f9
include zenodo atlas record
neuronflow Aug 16, 2025
5de59d8
Update README.md
neuronflow Aug 16, 2025
8a71a69
Update README.md
neuronflow Aug 16, 2025
4108bb9
Update README.md
neuronflow Aug 16, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 4 additions & 4 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -149,13 +149,13 @@ We also offer basic support for:
As of now we do not offer inverse transforms for greedy and elastix. Please resort to ANTs or Niftyreg for this.

### Atlas Reference
We provide a range of different atlases, namely:
We provide a range of different atlases via [zenodo](https://zenodo.org/records/15927391), namely:
- [SRI24](https://www.nitrc.org/frs/download.php/4502/sri24_anatomy_unstripped_nifti.zip) and its [skull-stripped version](https://www.nitrc.org/frs/download.php/4499/sri24_anatomy_nifti.zip)
- A slightly modified SRI24 atlas as found in the BraTS challenges (also with a skull-stripped version)
- MNI152: [MNI_ICBM_2009c_Nonlinear_Symmetric](https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/)
- A slightly modified MNI152 atlas as found in the BraTS challenge
- Slightly modified MNI152 and SRI24 atlas versions as employed for the [BraTS challenge algorithms](https://github.com/BrainLesion/BraTS)

We also support supplying a custom atlas in NIfTI format
> [!NOTE]
> Custom atlases of your choice in NIfTI format are also supported


### N4 Bias correction
Expand Down