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fix: conda environment update #4

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Ampholyt wants to merge 2 commits into from
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fix: conda environment update #4

Ampholyt wants to merge 2 commits into from

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@Ampholyt
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@Ampholyt Ampholyt commented Oct 28, 2024

remove the default channel from the environments

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what-the-diff bot commented Oct 28, 2024

PR Summary

  • Removal of 'defaults' channel from environment YAML files
    The 'defaults' channel has been eliminated from all environment YAML files. This change is geared towards a more streamlined and simplified setup, reducing potential complications that can arise from having multiple sources of packages.

@Ampholyt Ampholyt changed the title conda environment update fix: conda environment update Oct 28, 2024
visze
visze requested changes Jan 21, 2025
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@visze visze left a comment

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see individual comments

config/sbatch.yml
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@visze visze Jan 21, 2025

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you mostly reformated this file

workflow/envs/tensorflow.yml
channels:
- conda-forge
- bioconda
- anaconda
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@visze visze Jan 21, 2025

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we cannot use the anaconda channel

workflow/rules/model_interpretation.smk
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@visze visze Jan 21, 2025

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why you commented out both rules?

@Ampholyt Ampholyt closed this Jan 21, 2025
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@Ampholyt @visze