Refactor low-level code#830

Draft

jeromekelleher wants to merge 42 commits intotskit-dev:mainfrom

jeromekelleher:lshmm-directly-on-ts

Commits on Apr 13, 2023

Initial rough work on getting ancstor_matcher decoupled
jeromekelleher
committed

Commits on Apr 25, 2023

Commits on Apr 28, 2023

Commits on Apr 30, 2023

C code working and some tests
jeromekelleher
committed

Commits on May 1, 2023

Factor out the "output" struct in matcher
jeromekelleher
committed

Commits on May 3, 2023

Commits on May 5, 2023

Commits on May 6, 2023

Commits on May 8, 2023

Matching working in C (looks like)
jeromekelleher
committed

Commits on May 10, 2023

Commits on May 12, 2023

Commits on May 13, 2023

Implement some cludges to support initial zero site-paht
jeromekelleher
committed

Commits on May 15, 2023

Commits on May 16, 2023

Fiddle with some tricky issues
jeromekelleher
committed