MetacatUI: A client-side web interface for DataONE data repositories

EDAMannot is a command-line toolbox which applies to annotations related to the EDAM ontology.

BiodivTab is a tabular data benchmark for semantic table annotation tasks

Assessing bioinformatics software annotations: bio.tools case-study

Overview of currently annotated data packages within the Arctic Data Center as well as planning for a batch-update of legacy data packages with semantic annotations.

Semantic annotations of the RGB images from 5 paths of the SUN3D dataset.

Ground truth dataset of bioinformatics software, including 44 analyzed tools. The annotations are compared with those in bio.tools using the EDAM ontology. The dataset covers seven scientific fields: metagenomics, neuroimaging, phylogenetics, single-cell biology, systems biology, genetic variants, and microscopy.