Add MIMIC-IV FHIR (NDJSON) dataset, MPF clinical prediction task, and EHRMambaCEHR example pipeline#906

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evanfebrianto wants to merge 33 commits intosunlabuiuc:masterfrom

evanfebrianto:feat/ehrmamba

Commits on Mar 23, 2026

docs(tasks): expand MPF clinical prediction task docstrings
evanfebrianto
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test: temp NDJSON root, global_event_df guard, MPF max_len edge
evanfebrianto
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feat(examples): synthetic ablation grid and setup docstring
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docs: add MIMIC4FHIR and MPF task API pages
evanfebrianto
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fix(datasets): ensure exact encounter ID matching in CEHR sequences
evanfebrianto
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feat(datasets): add handling for unlinked events in CEHR sequences
evanfebrianto
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fix(datasets): improve handling of max_len in CEHR sequences and update related documentation
evanfebrianto
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refactor(datasets): rename and enhance visit index handling for unlinked events in CEHR sequences
evanfebrianto
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fix(datasets): enhance MIMIC4FHIRDataset to support gzip NDJSON files and update related documentation
evanfebrianto
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docs(datasets): update MIMIC4FHIRDataset documentation and enhance example script for memory management
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feat(datasets): add clinical concept key resolution for MedicationRequest in MIMIC4FHIRDataset
evanfebrianto
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feat(examples): update learning rate handling in training functions
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fix(datasets): improve handling of empty token_to_id in ConceptVocab from_json method
evanfebrianto
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Commits on Mar 28, 2026

Refactor/ndjson-ingestion (#1)
evanfebrianto
authored

Commits on Apr 12, 2026

Commits on Apr 14, 2026

refactor: dataset imports and improved documentation and code organization for better clarity and maintainability.
evanfebrianto
committed

Commits on Apr 15, 2026