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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 201 24

  2. paintera paintera Public

    Java 112 19

  3. render render Public

    Render transformed image tiles

    Java 36 34

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 35 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 11

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 19 12

Repositories

Showing 10 of 116 repositories
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 201 BSD-2-Clause 24 25 6 Updated Apr 21, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3’s past year of commit activity
    Java 5 BSD-2-Clause 7 2 0 Updated Apr 20, 2026
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 19 BSD-2-Clause 18 11 2 Updated Apr 20, 2026
  • hot-knife Public
    saalfeldlab/hot-knife’s past year of commit activity
    Java 5 GPL-2.0 10 1 4 Updated Apr 18, 2026
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 19 BSD-2-Clause 13 27 (1 issue needs help) 2 Updated Apr 15, 2026
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe’s past year of commit activity
    Java 1 BSD-2-Clause 6 7 2 Updated Apr 15, 2026
  • paintera-conversion-helper Public

    Script to assist conversion of n5 datasets to paintera-friendly formats

    saalfeldlab/paintera-conversion-helper’s past year of commit activity
    Kotlin 1 4 10 1 Updated Apr 15, 2026
  • n5-spark Public

    Spark-driven processing utilities for N5 datasets.

    saalfeldlab/n5-spark’s past year of commit activity
    Java 2 BSD-2-Clause 7 10 1 Updated Apr 14, 2026
  • gpg-attest Public

    browser extension + native messaging host + transparency log server that lets users attach GnuPG-signed attestations to digital content and record them on an append-only log. Anyone can query the log by artifact hash and evaluate attestations against their own trust model.

    saalfeldlab/gpg-attest’s past year of commit activity
    Go 1 0 0 0 Updated Apr 13, 2026
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 36 GPL-2.0 34 29 5 Updated Apr 13, 2026
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