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added the p_tkwargs also to the get_mermaid calls) #22

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Merged
gtribello merged 1 commit into from
Oct 9, 2025
Merged

added the p_tkwargs also to the get_mermaid calls) #22

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9 changes: 6 additions & 3 deletions src/PlumedToHTML/PlumedToHTML.py
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Original file line number Diff line number Diff line change
Expand Up @@ -450,13 +450,14 @@ def get_html( inpt, name, outloc, tested, broken, plumedexe, usejson=None, maxch
else : raise Exception("Could not find toggler command for " + val)
return html

def get_mermaid( executible, inpt, force, test_plumed_kwargs={} ) :
def get_mermaid( executible, inpt, force,*, test_plumed_kwargs={} ) :
"""
Generate the mermaid graph showing how data passes through PLUMED input file

Keyword arguments:
inpt -- A string containing the PLUMED input
force -- Bool that if true ensures we show the graph for the backwards pass through the action list
test_plumed_kwargs -- a dictionary of extra keywords to pass to the test_plumed utility, useful for passing an"header"
"""
# Write the plumed input to a file
iff = open( "mermaid_plumed.dat", "w+")
Expand Down Expand Up @@ -735,9 +736,11 @@ def processMarkdownString( inp, filename, plumedexe, plumed_names, actions, ofil
if usemermaid!="" :
skipplumedfile, mermaidinpt = True, ""
if usemermaid=="value" :
mermaidinpt = get_mermaid( plumedexe[-1], plumed_inp, False )
mermaidinpt = get_mermaid( plumedexe[-1], plumed_inp, False,
test_plumed_kwargs=test_plumed_kwargs)
elif usemermaid=="force" :
mermaidinpt = get_mermaid( plumedexe[-1], plumed_inp, True )
mermaidinpt = get_mermaid( plumedexe[-1], plumed_inp, True,
test_plumed_kwargs=test_plumed_kwargs)
else :
raise RuntimeError(usemermaid + "is invalid instruction for use mermaid")
if ghmarkdown : ofile.write("```mermaid\n" + mermaidinpt + "\n```\n")
Expand Down