M-Lab of Adaptive Intelligence @ EPFL

All

28 repositories

CellSeg3D
Public
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
segmentation 3d
segmentation 3d
Jupyter Notebook
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MIT License
•21•119•3•1•Updated Mar 9, 2026Mar 9, 2026
FMPose3D
Public
A monocular 3D pose estimation algorithm for humans and other animals
pose-estimation 3d-pose-estimation deeplabcut
pose-estimation 3d-pose-estimation deeplabcut
Python
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Apache License 2.0
•11•82•1•0•Updated Feb 26, 2026Feb 26, 2026
CEBRA
Public
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
machine-learning pytorch neuroscience-methods
machine-learning pytorch neuroscience-methods contrastive-learning
Python
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Other
•95•1.1k•10•6•Updated Feb 2, 2026Feb 2, 2026
.github
Public
1•0•0•0•Updated Jan 15, 2026Jan 15, 2026
element-deeplabcut
Public
DataJoint Element for behavioral analysis with DeepLabCut
Jupyter Notebook
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MIT License
•38•0•0•0•Updated Jan 14, 2026Jan 14, 2026
DISTIL
Public
Jupyter Notebook
•
Apache License 2.0
•0•8•1•0•Updated Jul 22, 2025Jul 22, 2025
CEBRA-demos
Public
CEBRA Demo Notebooks. Please see all of them at the URL below:
Jupyter Notebook
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Other
•6•15•0•0•Updated Jun 30, 2025Jun 30, 2025
CEBRA-assets
Public
Web assets for CEBRA (cebra.ai) and CEBRA DOCS!
1•0•0•0•Updated Jun 30, 2025Jun 30, 2025
AmadeusGPT
Public
We turn natural language descriptions of behaviors into machine-executable code
deeplabcut llms chatgpt
deeplabcut llms chatgpt segment-anything cebra amadeusgpt
Jupyter Notebook
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Apache License 2.0
•12•233•1•3•Updated Jun 30, 2025Jun 30, 2025
LLaVAction
Public
action-recognition behavioral-analysis llms
action-recognition behavioral-analysis llms mmlms
Jupyter Notebook
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Other
•2•50•1•0•Updated Jun 27, 2025Jun 27, 2025
WorkspaceTemplate
Public template
Python
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Apache License 2.0
•0•7•0•0•Updated Jun 19, 2025Jun 19, 2025
SegementationLabeler
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Apr 14, 2025Apr 14, 2025
AROS
Public
💍
Jupyter Notebook
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Apache License 2.0
•2•26•0•0•Updated Feb 3, 2025Feb 3, 2025
modelzoo-figures
Public
SuperAnimal models supporting data
Jupyter Notebook
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GNU General Public License v3.0
•3•17•0•1•Updated Jan 20, 2025Jan 20, 2025
pydensecrf
Public
Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.
C++
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MIT License
•425•3•0•1•Updated Dec 23, 2024Dec 23, 2024
Leaf_Ant_Analysis
Public
supporting code and models for Gilbert, Glastad et al.
Jupyter Notebook
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Apache License 2.0
•0•1•0•0•Updated Dec 1, 2024Dec 1, 2024
AllenBrainConnectivityGraph
Public
Create a connectivity map based on injection sites and target sites of regions of interest.
Python
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MIT License
•0•6•0•0•Updated Sep 29, 2024Sep 29, 2024
MouseArmTransformer
Public
A lifting transformer used to generate 3D DeepLabCut estimates for an adult mouse forelimb
Jupyter Notebook
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Apache License 2.0
•0•6•1•0•Updated Sep 21, 2024Sep 21, 2024
ml-agents
Public
The Unity Machine Learning Agents Toolkit (ML-Agents) is an open-source project that enables games and simulations to serve as environments for training intelli…
C#
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Other
•4.4k•0•0•0•Updated May 3, 2024May 3, 2024
DLC2Kinematics
Public
a module for kinematic analysis of deeplabcut outputs
kinematics deeplabcut kinematik
kinematics deeplabcut kinematik
Jupyter Notebook
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Apache License 2.0
•26•153•3•0•Updated Dec 13, 2023Dec 13, 2023
cebra-figures
Public
Figures, tables and stats for Schneider, Lee and Mathis 2022: Learnable latent embeddings for joint behavioral and neural analysis.
Jupyter Notebook
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Other
•3•21•0•2•Updated Oct 6, 2023Oct 6, 2023
Camera_Control
Public
a Python API to record video & system timestamps from Imaging Source USB cameras
Python
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MIT License
•14•69•5•0•Updated Feb 21, 2023Feb 21, 2023
DeepLabCut
Public
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Python
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GNU Lesser General Public License v3.0
•1.8k•1•0•0•Updated Oct 26, 2022Oct 26, 2022
JoystickControlSystem
Public
joystick system used in Mathis et al, 2017
Python
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MIT License
•2•7•0•0•Updated Aug 23, 2022Aug 23, 2022
SplitWheelVR
Public
follow along for updates and information on our 2-wheel VR system for mice
0•0•0•0•Updated Jul 2, 2022Jul 2, 2022
MouseArm-3D-tooling
Public
Python
•0•0•0•0•Updated Sep 14, 2021Sep 14, 2021
DeepLabCut-Workshop-Materials
Public
Workshop material for using DeepLabCut
Python
•37•1•0•0•Updated Apr 28, 2021Apr 28, 2021
Docker4DeepLabCut2.0
Public
Docker container for running DeepLabCut2.0 (linux support only)
Jupyter Notebook
•26•0•0•0•Updated Nov 15, 2019Nov 15, 2019