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Pull requests: nf-core/modules

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Pull requests list

Add tmb module new module Adding a new module
#9660 opened Jan 15, 2026 by georgiakes Loading…
11 of 17 tasks
Shigapass
#9658 opened Jan 15, 2026 by eit-maxlcummins Loading…
12 of 17 tasks
1
Prepare gens input data module
#9656 opened Jan 15, 2026 by Jakob37 • Draft
1 of 17 tasks
1
Add ViralConsensus module
#9655 opened Jan 14, 2026 by lucaspatel Loading…
15 of 17 tasks
1
Emit both png and pdf plots in deseq2
#9654 opened Jan 14, 2026 by delfiterradas • Draft
17 tasks
1
@delfiterradas
Fix cellranger multi's singplex flex failure and add tests
#9652 opened Jan 14, 2026 by tgelafr-pfzr • Draft
3 of 9 tasks
1
Update seqtk/* version number collection for nf-core 3.5
#9648 opened Jan 14, 2026 by takiifujita-ui Loading…
12 of 16 tasks
1
Bump openms version to 3.5.0 and migrate to version topics
#9638 opened Jan 12, 2026 by jonasscheid Loading…
17 tasks
17
add nirvana
#9633 opened Jan 9, 2026 by FriederikeHanssen Loading…
17 tasks
8
BBsplit unmapped - enhancement
#9627 opened Jan 8, 2026 by EladH1 Loading…
4 of 17 tasks
Add gapseq modules for bacterial metabolic pathway analysis
#9620 opened Jan 7, 2026 by Copilot AI • Draft
1
@brovolia
Update samtools/index to version topic
#9613 opened Dec 31, 2025 by SPPearce Loading…
3
traitar module is drafted
#9605 opened Dec 22, 2025 by brovolia Loading…
1
@brovolia
15
WIP: new module: MultiQC_SAV
#9587 opened Dec 18, 2025 by matthdsm Loading…
17 tasks
4
Add rgi/bwt
#9585 opened Dec 18, 2025 by vinisalazar Loading…
13
Fix fastANI module
#9583 opened Dec 17, 2025 by Ethan-Hetrick Loading…
10 of 17 tasks
36
RiboCode - add error handling where the cli tool does not
#9581 opened Dec 17, 2025 by JackCurragh Loading…
9 of 17 tasks
1
BiG Slice modules for nf-core
#9564 opened Dec 12, 2025 by SkyLexS Loading…
11 of 17 tasks
@SkyLexS
Fix for issue #5021 verifybamid2 module
#9563 opened Dec 12, 2025 by mmYeung Loading…
1
3
Update BWA_INDEX memory formula to match BWAMEM2_INDEX pattern
#9528 opened Dec 8, 2025 by Copilot AI • Draft
11 of 17 tasks
1
@edmundmiller
bump vcf2maf to ensembl-vep=113.4 and update containers
#9515 opened Dec 6, 2025 by JustinBellavance Loading…
17 tasks
2
Assemblyscan 1.0.0
#9506 opened Dec 4, 2025 by eit-maxlcummins Loading…
10 tasks done
7
Get conda envs
#9504 opened Dec 4, 2025 by mirpedrol Loading…
update bclconvert with topic
#9494 opened Dec 2, 2025 by matthdsm Loading…
17 tasks
1
fix issue 9424: MultiQC report handling for AWS batch with S3 workDir
#9455 opened Nov 25, 2025 by SZhengP Loading…
3 of 17 tasks
1
1
ProTip! Updated in the last three days: updated:>2026-01-12.