Search results

Port local modules / subworkflows where possible to nf-core

enhancement

Status: Open.

#486 In nf-core/chipseq;

· Kevin-Brockers opened on Mar 11, 2026

strict syntax - language update

enhancement

Status: Open.

#485 In nf-core/chipseq;

· Kevin-Brockers opened on Mar 11, 2026

Update subworkflows and modules

enhancement

Status: Open.

#484 In nf-core/chipseq;

· Kevin-Brockers opened on Mar 11, 2026

Update pipelines to use topic channels

enhancement

Status: Open.

#483 In nf-core/chipseq;

· Kevin-Brockers opened on Mar 11, 2026

Clarify documentation for antibody

bugSomething isn't workingSomething isn't working

Status: Open.

#479 In nf-core/chipseq;

· adthrasher opened on Nov 4, 2025

Clarify genome size error and update usage documentation

bugSomething isn't workingSomething isn't working

Status: Open.

#478 In nf-core/chipseq;

· adthrasher opened on Nov 4, 2025

Port bedtools_genomecov from local to nf-core module

improve-behaviourOptimise code without adding functionalityOptimise code without adding functionality

Status: Open.

Task

#469 In nf-core/chipseq;

· FloWuenne opened on Jun 24, 2025

Change bigWig creating to use --bga option

bugSomething isn't workingSomething isn't working

Status: Open.

#468 In nf-core/chipseq;

· FelixKrueger opened on Jun 24, 2025

File name collision when using 1-treatment replicate vs. >1-control replicates, i.e. cannot specify the same sample,replicate pair for each different control replicate

bugSomething isn't workingSomething isn't working

Status: Open.

#467 In nf-core/chipseq;

· a1ultima opened on Jun 16, 2025

ERROR ~ Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (samplesheet_test.csv)'

bugSomething isn't workingSomething isn't working

Status: Open.

#466 In nf-core/chipseq;

· tbooth opened on Jun 5, 2025

ERROR ~ Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:DEEPTOOLS_COMPUTEMATRIX (SPT5_T15_REP1)'

bugSomething isn't workingSomething isn't working

Status: Open.

#465 In nf-core/chipseq;

· tbooth opened on Jun 5, 2025

Add minimum_alignment_q_score parameter for MAPQ filtering (similar to nf-core/cutandrun)

enhancement

Status: Open.

#463 In nf-core/chipseq;

· wanisajad opened on May 16, 2025