Pylint alerts corrections as part of an intervention experiment 1853#1855
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evidencebp wants to merge 16 commits intomaterialsproject:masterfrom
Closed
Pylint alerts corrections as part of an intervention experiment 1853#1855evidencebp wants to merge 16 commits intomaterialsproject:masterfrom
evidencebp wants to merge 16 commits intomaterialsproject:masterfrom
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Made a readable line shorter
Was a very long format line with 135 characters which wasn't readable. I reduced it to 107, higher than the recommended 100, while keeping the main part in the same line.
Was a very long format line with 135 characters which wasn't readable. I reduced it to 107, higher than the recommended 100, while keeping the main part in the same line.
Readable line in commented out code
…ocks The post_save class method had 6 nesting levels while pylint recommends not to have more than 5. I extracted the small and targeted update_columns_by_flat method, with 3 nesting levels.
…ildcard-import Wildcard imports make it harder to understand what is imported from where. Removing it is also a defensive programming act, lowering the probability of collisions due to future new imports or objects.
The methods get_string and from_string of the class MPFile had 14 branches each. Pylint recommends not to have more than 12 to reduce complexity, ease understanding and testing. I extracted from each method a small local method to reduce the number of branches and increase structuring.
Method run had 82 statements while pylint suggest not to have more than 50. I extracted some small local methods, adding structure and making the method shorter. Please note that the end of the method was not reachable (and still so) due to a break, which might be a bug. I added a TODO there to mark that.
The method add_structure of class MPFileCore had 17 branches while pylint recommends to have no more than 12. I extracted a small method _build_structure that builds the structure from the source while using many branches to handle the source possible types.
…sion.py too-many-statements Function run had 117 statements while pylint recommends not to have more than 50. The function was actually structured since it had different logics for different crystal structures. I extracted small unrelated functions for these logics.
The make function had 74 statement while pylint recommends to have at most 50. I extracted small methods handling parts of the function.
…on-caught Catching Exception instead of specific exceptions might hide unexpected ones. Function format_cell caught Exception. isnan does not raise exceptions https://docs.python.org/3/library/math.html#math.isnan str might lead to UnicodeEncodeError https://stackoverflow.com/questions/33556465/is-there-any-object-can-make-str-function-throw-error-or-exception-in-python
…caught Method to_backgrid_dict of class table catches Exception. Catching Exception instead of specific exceptions might hide unexpected ones. I changed to catching AttributeError, as in the StackOverflow post in the comment above.
Function get_specs had 19 branches while pylint suggest not to have more than 12. I extracted method for populating the data structures and handling the different method names.
…ission Method has_read_permission of class SwaggerView had 20 branches while pylint recommends to have no more than 12. I extracted method to reduce that, making the code more structured. This fixed also the too-many-return-statements and too-many-statements alerts in the same method.
Member
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Thanks! The most important piece of the code base to focus on would be the |
Author
Member
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Thanks! This PR can be closed then, right? And the PR #1857 can be rebased on the main branch to exclude the update on the requirements files. |
Author
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Yes |
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Summary
Major changes:
Makes the interventions describe in intervention issue.
The experiment is described here.
Each intervention was done in a dedicated commit with a message explaining it.
Todos
In mpcontribs-portal\mpcontribs\users\redox_thermo_csp\pre_submission.py I modified the method run since it had too-many-statments alerts.
Please note that the end of the method was not reachable (and still so) due to a break, which might be a bug.
I added a TODO there to mark that.
There were broad-exception-caught alerts in some files.
Such handling (e.g., catching Exception) might hide bugs due to unexpected exception.
Therefore it is recommended to catch sepcific exceptions.
I could not understand whare are the expected exceptions in few of the cases.
Therefore, I did not fix these alerts yet.
Can you help me with that?
mpcontribs-portal\mpcontribs\portal\views.py
Line 490 in make_download catches Exception
mpcontribs-ingester\mpcontribs\ingester\webui.py
Line 184 in view catches Exception
Line 242 in contribute catches Exception
mpcontribs-serverless\make_download\app.py
Line 60 in lambda_handler catches Exception
mpcontribs-client\mpcontribs\client_init_.py
Line 371 method display in class Table
Checklist
ruff.mypy.duecredit@due.dcitedecorators to reference relevant papers by DOI (example)Tip: Install
pre-commithooks to auto-check types and linting before every commit: