Open
Conversation
Collaborator
Author
|
I am not quite sure about the TOUs but I assume the data is no longer under embargo as of the publication of the paper. |
ahernank
requested changes
Apr 24, 2026
| "source": [ | ||
| "## Whole-genome sequencing and variant calling\n", | ||
| "\n", | ||
| "All samples in `Adar1.0` have been sequenced individually to high coverage using Illumina technology at the Wellcome Sanger Institute. These sequence data have then been analysed to identify genetic variants such as single nucleotide polymorphisms (SNPs). After variant calling, both the samples and the variants have been through a range of quality control analyses, to ensure the data are of high quality. Both the raw sequence data and the curated variant calls are openly available for download and analysis. " |
Collaborator
There was a problem hiding this comment.
Can you update this to include:
- A brief description from the methods in the paper
- Point out to the paper with the full methods.
Collaborator
There was a problem hiding this comment.
Same with QC and site filters below, we didn't do bits from there, could we please exclude?
Collaborator
There was a problem hiding this comment.
Update to only to only include data that is currently available & hosted by us.
Co-authored-by: Anastasia Hernandez-Koutoucheva <ah32@sanger.ac.uk>
Co-authored-by: Anastasia Hernandez-Koutoucheva <ah32@sanger.ac.uk>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Addresses #113 .