- 🔬 PhD & Research Assistant at The Chinese University of Hong Kong (CUHK), researching RNA modification detection from Nanopore direct RNA sequencing
- 🧪 Built ModNet — multi-task deep learning for RNA modification detection from Nanopore DRS
- 🐋 Maintainer of Baleen / pybaleen — RNA modification detector based on Nanopore direct-RNA-seq
- 🧑💻 Work across nanopore bioinformatics, RNA-seq analysis, gene fusion detection, and clinical genomics
- 🐍 Primary languages: Python, R, C — daily driver of Jupyter, Snakemake, and Docker
- 🌱 Currently exploring deep learning for genomics and LLM applications in scientific writing
Languages & Notebooks:
Tools & Frameworks:
Research Domains:
| Project | Description |
|---|---|
| ModNet | Multi-task deep learning for RNA modification detection from Nanopore DRS |
| pybaleen / Baleen | RNA modification detector based on Nanopore direct-RNA-seq |
| RealFusionSimulator | A real fusion simulator for benchmarking |
| scSpliceAtlas | Single-cell splice variant atlas |
| MoonFinder3 | Gene fusion detection tool |
| RNA-seq-is-everything | RNA-seq analysis resources |
| opencode-scientific-writer | OpenCode plugin for scientific writing |
- LAFITE Reveals the Complexity of Transcript Isoforms in Subcellular Fractions — Advanced Science, 2023. DOI
- Using Baleen to Identify Combinatorial RNA Modification Events at Transcript Isoform Level through Nanopore Direct RNA Sequencing — SKLA Abstract, CUHK, 2023
