Migrate to UV and upgrade linkml dependency

.github/workflows/deploy-docs.yaml

@@ -8,24 +8,24 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Checkout
-      uses: actions/checkout@main
+      uses: actions/checkout@v4
       with:
-        fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
-    
+        fetch-depth: 0
+
     - name: Set up Python 3.
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
         python-version: 3.9
 
-    - name: Install Poetry.
-      uses: snok/install-poetry@v1.3
+    - name: Install uv
+      uses: astral-sh/setup-uv@v5
 
     - name: Install dependencies.
-      run: poetry install -E docs
-    
+      run: uv sync --extra docs
+
     - name: Build documentation.
       run: |
         mkdir -p docs
         touch docs/.nojekyll
-        poetry run gen-doc -d docs src/linkml_tutorial/schema/linkml_tutorial.yaml
-        poetry run mkdocs gh-deploy
+        uv run gen-doc -d docs src/linkml_tutorial/schema/linkml_tutorial.yaml
+        uv run mkdocs gh-deploy

.github/workflows/main.yaml

@@ -1,6 +1,5 @@
 # Built from:
 # https://docs.github.com/en/actions/guides/building-and-testing-python
-# https://github.com/snok/install-poetry#workflows-and-tips
 
 name: Build and test linkml-runtime
 
@@ -20,34 +19,27 @@ jobs:
       #       check-out repo and set-up python
       #----------------------------------------------
       - name: Check out repository
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 
       #----------------------------------------------
-      #          install & configure poetry
+      #              install uv
       #----------------------------------------------
-      - name: Install Poetry
-        uses: snok/install-poetry@v1.3
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
 
       #----------------------------------------------
-      # install dependencies if cache does not exist 
+      #            install dependencies
       #----------------------------------------------
       - name: Install dependencies
-        run: poetry install --no-interaction --no-root
+        run: uv sync
 
       #----------------------------------------------
-      #    install your root project, if required 
-      #----------------------------------------------      
-      - name: Install library
-        run: poetry install --no-interaction
-
-      #----------------------------------------------
-      #              run test suite   
+      #              run test suite
       #----------------------------------------------
       - name: Run tests
         run: make test
-

.github/workflows/pypi-publish.yaml

@@ -6,33 +6,28 @@ on:
 
 jobs:
   build-n-publish:
-    name: Build and publish Python 🐍 distributions 📦 to PyPI
+    name: Build and publish Python distributions to PyPI
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
 
     - name: Set up Python
-      uses: actions/setup-python@v2.2.2
+      uses: actions/setup-python@v5
       with:
         python-version: 3.9
 
-    - name: Install Poetry
-      uses: snok/install-poetry@v1.1.6
-      with:
-        virtualenvs-create: true
-        virtualenvs-in-project: true
+    - name: Install uv
+      uses: astral-sh/setup-uv@v5
 
     - name: Install dependencies
-      run: poetry install --no-interaction
+      run: uv sync
 
     - name: Build source and wheel archives
-      run: |
-        poetry version $(git describe --tags --abbrev=0)
-        poetry build
+      run: uv build
 
-    - name: Publish distribution 📦 to PyPI
-      uses: pypa/gh-action-pypi-publish@v1.2.2
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@v1
       with:
         user: __token__
         password: ${{ secrets.PYPI_PASSWORD }}

Makefile

@@ -6,7 +6,7 @@ SHELL := bash
 .SUFFIXES:
 .SECONDARY:
 
-RUN = poetry run
+RUN = uv run
 # get values from about.yaml file
 SCHEMA_NAME = $(shell sh ./utils/get-value.sh name)
 SOURCE_SCHEMA_PATH = $(shell sh ./utils/get-value.sh source_schema_path)
@@ -48,7 +48,7 @@ setup: install gen-project gen-examples gendoc git-init-add
 
 # install any dependencies required for building
 install:
-	poetry install
+	uv sync
 .PHONY: install
 
 # ---
@@ -68,7 +68,7 @@ update-template:
 
 # todo: consider pinning to template
 update-linkml:
-	poetry add -D linkml@latest
+	uv add --dev linkml@latest
 
 # EXPERIMENTAL
 create-data-harmonizer:

pyproject.toml

@@ -1,25 +1,31 @@
-[tool.poetry]
+[project]
 name = "linkml_tutorial"
 version = "0.1.0"
-description = "A repostitory that walks through schema generation. "
-authors = ["LinkML Team <admin@linkml.org>"]
-license = "MIT"
+description = "A repository that walks through schema generation."
+authors = [
+    {name = "LinkML Team", email = "admin@linkml.org"},
+]
+license = {text = "MIT"}
 readme = "README.md"
-include = ["README.md", "src/linkml_tutorial/schema", "project"]
+requires-python = ">=3.9"
+dependencies = [
+    "linkml-runtime>=1.9.5",
+]
 
-[tool.poetry.dependencies]
-python = "^3.9"
-linkml-runtime = "^1.1.24"
+[project.optional-dependencies]
+docs = ["linkml", "mkdocs-material"]
 
-[tool.poetry.dev-dependencies]
-linkml = "^1.3.5"
-mkdocs-material = "^8.2.8"
-mkdocs-mermaid2-plugin = "^0.6.0"
-schemasheets = "^0.1.14"
+[dependency-groups]
+dev = [
+    "linkml>=1.9.6",
+    "mkdocs-material>=8.2.8",
+    "mkdocs-mermaid2-plugin>=0.6.0",
+    "schemasheets>=0.1.14",
+]
 
 [build-system]
-requires = ["poetry-core>=1.0.0"]
-build-backend = "poetry.core.masonry.api"
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
-[tool.poetry.extras]
-docs = ["linkml", "mkdocs-material"]
+[tool.hatch.build.targets.wheel]
+packages = ["src/linkml_tutorial"]