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  1. PPanGGOLiN PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 296 31

  2. PlaScope PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    Roff 23 4

  3. netsyn netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    Python 9 2

  4. ASMC ASMC Public

    ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.

    Python 6 2

  5. PANORAMA PANORAMA Public

    PANORAMA Project

    Python 5

  6. pangenomeNEM pangenomeNEM Public

    C 4

Repositories

Showing 10 of 21 repositories
  • PanGBank-api Public
    labgem/PanGBank-api’s past year of commit activity
    Python 0 0 0 1 Updated Apr 3, 2026
  • PanGBank-wf Public

    A pipeline to build a PPanGGoLiN pangenome database from any source of genomes.

    labgem/PanGBank-wf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 1, 2026
  • PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    labgem/PPanGGOLiN’s past year of commit activity
    Python 296 31 11 0 Updated Mar 30, 2026
  • pan2met-wf Public

    Predict metabolic networks at pangenome scale

    labgem/pan2met-wf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 23, 2026
  • PanGBank-test-datasets Public

    Test data to be used for automated testing with the pangbank pipeline.

    labgem/PanGBank-test-datasets’s past year of commit activity
    0 0 0 0 Updated Mar 13, 2026
  • microscope-user-doc Public

    MicroScope Platform User Documentation

    labgem/microscope-user-doc’s past year of commit activity
    3 6 0 0 Updated Feb 24, 2026
  • PANORAMA Public

    PANORAMA Project

    labgem/PANORAMA’s past year of commit activity
    Python 5 0 0 3 Updated Feb 16, 2026
  • PanGBank-cli Public

    Command-line tool for retrieving pangenomes using the PanGBank API.

    labgem/PanGBank-cli’s past year of commit activity
    Python 2 1 0 0 Updated Feb 5, 2026
  • metacoco Public

    METAbolism COmpletion for microbial COmmunities

    labgem/metacoco’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 23, 2026
  • CAESAR Public
    labgem/CAESAR’s past year of commit activity
    Python 0 0 0 0 Updated Jan 12, 2026
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