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Fix path with BDV test #73

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Merged
ehrenfeu merged 3 commits into from
Apr 8, 2025
+6 −14
Merged

Fix path with BDV test #73

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a8aa1de
Fix variable for the path
lguerard Apr 8, 2025
d772381
Ruff formatting
lguerard Apr 8, 2025
ebb5e96
Fix path to work with testing
lguerard Apr 8, 2025
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20 changes: 6 additions & 14 deletions tests/bdv/test_define_dataset_auto.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,7 @@
from imcflibs.imagej import bdv


def set_default_values(
project_filename, file_path, series_type="Tiles"
):
def set_default_values(project_filename, file_path, series_type="Tiles"):
"""Set the default values for dataset definitions.

Parameters
Expand All @@ -35,7 +33,7 @@ def set_default_values(
+ ".xml"
+ "] "
+ "path=["
+ file_info["path"]
+ file_info["full"]
+ "] "
+ "exclude=10 "
+ "bioformats_series_are?="
Expand Down Expand Up @@ -80,7 +78,7 @@ def test_define_dataset_auto_tile(tmp_path, caplog):
cmd = "Define Multi-View Dataset"

# Set the default values for dataset definitions
options = set_default_values(project_filename, file_path)
options = set_default_values(project_filename, file_info["path"])

# Construct the options for dataset definitions
options = (
Expand All @@ -106,9 +104,7 @@ def test_define_dataset_auto_tile(tmp_path, caplog):
final_call = "IJ.run(cmd=[%s], params=[%s])" % (cmd, options)

# Define the dataset using the "Auto-Loader" option
bdv.define_dataset_auto(
project_filename, file_info["path"], bf_series_type
)
bdv.define_dataset_auto(project_filename, file_info["path"], bf_series_type)
# Check if the final call is in the log
assert final_call == caplog.messages[0]

Expand Down Expand Up @@ -146,9 +142,7 @@ def test_define_dataset_auto_angle(tmp_path, caplog):
cmd = "Define Multi-View Dataset"

# Set the default values for dataset definitions
options = set_default_values(
project_filename, file_path, bf_series_type
)
options = set_default_values(project_filename, file_info["path"], bf_series_type)

# Construct the options for dataset definitions
options = (
Expand All @@ -175,8 +169,6 @@ def test_define_dataset_auto_angle(tmp_path, caplog):
final_call = "IJ.run(cmd=[%s], params=[%s])" % (cmd, options)

# Define the dataset using the "Auto-Loader" option
bdv.define_dataset_auto(
project_filename, file_info["path"], bf_series_type
)
bdv.define_dataset_auto(project_filename, file_info["path"], bf_series_type)
# Check if the final call is in the log
assert final_call == caplog.messages[0]
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