[Snyk] Security upgrade pyasn1 from 0.5.1 to 0.6.2

[q1blue]

Snyk has created this PR to fix 1 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

• requirements.txt

⚠️ Warning

transformers 4.30.2 requires tokenizers, which is not installed.
qdrant-client 1.3.1 has requirement numpy<1.21; python_version < "3.8", but you have numpy 1.21.3.
python-docx 1.1.2 has requirement typing-extensions>=4.9.0, but you have typing-extensions 4.5.0.
platformdirs 4.0.0 has requirement typing-extensions>=4.7.1; python_version < "3.8", but you have typing-extensions 4.5.0.
onnxruntime 1.14.1 has requirement numpy>=1.21.6, but you have numpy 1.21.3.
llama-index 0.6.35 requires langchain, which is not installed.
llama-index 0.6.35 requires tiktoken, which is not installed.
llama-index 0.6.35 has requirement fsspec>=2023.5.0, but you have fsspec 2023.1.0.
fake-useragent 1.1.3 has requirement importlib-metadata~=4.0; python_version < "3.8", but you have importlib-metadata 6.6.0.
chromadb 0.3.26 requires hnswlib, which is not installed.
chromadb 0.3.26 requires tokenizers, which is not installed.
chromadb 0.3.26 requires duckdb, which is not installed.
chromadb 0.3.26 has requirement numpy>=1.21.6, but you have numpy 1.21.3.

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Important

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• This PR was automatically created by Snyk using the credentials of a real user.
• Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

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EntelligenceAI PR Summary

This PR fixes a security vulnerability by pinning a transitive dependency to a safe minimum version.

• Added pyasn1>=0.6.2 to requirements.txt to address Snyk security vulnerability
• Explicitly pinned transitive dependency to prevent installation of vulnerable versions
• Fixed formatting by adding newline at end of requirements.txt file

[gemini-code-assist]

Summary of Changes

Hello @q1blue, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request, automatically created by Snyk, aims to enhance the project's security posture by upgrading the pyasn1 dependency to version 0.6.2. This change directly mitigates an identified vulnerability, ensuring that the project's dependency tree is more robust against known security risks.

Highlights

• Dependency Upgrade: The pyasn1 dependency has been upgraded from version 0.5.1 to 0.6.2.
• Security Vulnerability Fix: This upgrade specifically addresses a security vulnerability identified in pyasn1, as indicated by Snyk.
• Automated Remediation: The pull request was automatically generated by Snyk to apply this security fix.

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[entelligence-ai-pr-reviews]

Walkthrough

This PR addresses a security vulnerability by explicitly pinning a transitive dependency to a safe version. The change adds pyasn1>=0.6.2 to the requirements file, ensuring that the application uses a minimum version that resolves a security issue identified by Snyk. Since pyasn1 is not a direct dependency of the application but is pulled in transitively, this explicit pinning prevents vulnerable versions from being installed. Additionally, a minor formatting improvement was made by adding a newline at the end of the file to comply with standard file formatting conventions.

Changes

File(s)	Summary
requirements.txt	Added security dependency pyasn1>=0.6.2 to address Snyk-identified vulnerability and added newline at end of file.

Sequence Diagram

This diagram shows the interactions between components:

sequenceDiagram
    participant Dev as Developer
    participant Deps as requirements.txt
    
    Note over Dev,Deps: This PR only updates dependency constraints
    Dev->>Deps: Add pyasn1>=0.6.2 constraint
    Note over Deps: No code changes or component<br/>interactions to diagram

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[gemini-code-assist]

Code Review

This pull request from Snyk correctly addresses a security vulnerability by upgrading pyasn1. While merging this change is recommended for security, it's crucial to address the significant underlying issues with the project's dependency management.

The requirements.txt file has several problems:

• Dependency Conflicts: As highlighted in the PR description, there are numerous dependency version conflicts and missing packages. These can cause application instability and runtime errors.
• Duplicate Packages: The file contains duplicate entries (e.g., tiktoken, psycopg2, Pillow, pytest).
• Lack of Sorting: The packages are not sorted alphabetically, which makes the file harder to read and maintain.

I strongly recommend a follow-up action to perform a thorough audit and cleanup of requirements.txt. This should include removing duplicates, sorting all entries, and, most importantly, resolving all dependency conflicts. Using a dependency management tool like pip-tools could help automate this process and prevent such issues in the future.

[gemini-code-assist]

This security fix is important. However, a couple of improvements can be made here:

1. Pin exact versions: For better build reproducibility, it's a good practice to pin dependencies to an exact version using == instead of a range with >=. This ensures that the same version is used across all environments, preventing potential issues from unintended package updates.
2. Add trailing newline: It's a common convention to end text files with a single newline character. This file is missing one.

I've included a suggestion that applies both changes. Additionally, the requirements.txt file has several other issues like duplicate packages and lack of alphabetical sorting which should be addressed in a separate effort to improve maintainability.

llama_cpp_python==0.2.7
pyasn1==0.6.2 # not directly required, pinned by Snyk to avoid a vulnerability

[snyk-io]

✅ Snyk checks have passed. No issues have been found so far.

Status	Scanner	Critical	High	Medium	Low	Total (0)
✅	Open Source Security	0	0	0	0	0 issues

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