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AbArray And CL EDA #132

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@bgajria bgajria commented Dec 9, 2025

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steve-fischer-200 and others added 30 commits December 9, 2025 10:34
@steve-fischer-200
fix tuning table syntax errors
8b5a107
@steve-fischer-200
fix intronjunction queries (#130)
46f440f
@steve-fischer-200
avoid use of dots.nasequence (#128)
d305fea
@steve-fischer-200
use partition keys for taxonspecies_p (#124)
a44fa1b
@bgajria
Merge pull request #131 from VEuPathDB/cellular-location-eda
47429a3 
AbArray And CL EDA
@jbrestel
add get only syntenic orthologs (inner join) and add union for unity …
624fc68 
…mapping reference
@jbrestel
Merge branch 'master' of github.com:VEuPathDB/ApiCommonModel
7303ce1
@jbrestel
filter metatable by taxa
4a56b4f
@steve-fischer-200
adjust MetaTable query
baca6e5
TODO : add cellularLocalizationWdkAttributes attr in attributeList, f…
a5ff61a 
…or cellularLocalizationEdaQuestion
@jbrestel
first pass at replace study and studylink with claude
8cbbd22
@steve-fischer-200
fix TFBSGene_p.psql
e12b4d4
@steve-fischer-200
add maxRecommended msg to org params
4bddc85
@jbrestel
fix all remianing instances of study.studylink
4a9c67d
@jbrestel
changed the remaining study.study and studylink to nodeset and nodeno…
fce42ed 
…deset
we dont want to show Genetic variation section in gene pages
a04c607
@steve-fischer-200
add index to apidbtuning.transcriptattributes
250811e
@steve-fischer-200
add ProteinAttributes tuning table
bbd6971
@steve-fischer-200
fix post cache queries
21fb3b3
@steve-fischer-200
fix proteinattributes index
6c0794e
@bgajria
Merge pull request #133 from VEuPathDB/node-node-set
fbfbf62 
StudyLink and Study -> NodeSet and NodeNodeSet
replace study and studylink, and deal with investigation_id
8122ae9
replace study and studylink, and deal with investigation_id in DST files
ece6cbe
Merge branch 'node-node-set'
5a4fd2e
replace study with nodeset
434482e
@steve-fischer-200
fix expression confidence queries
d91a89c
@steve-fischer-200
fix bug in apidbtuning.Profile
c06815a
@steve-fischer-200
use transattr tuning tbl as needed
dec6a7c
@steve-fischer-200
fix sense/antisense query
dee4bf5
@ryanrdoherty
Fix attributes list for EuPath
9835cba
steve-fischer-200 and others added 30 commits December 16, 2025 13:19
@steve-fischer-200
speed up user comments query
20048cc
@jbrestel
add categoryIri for wgcna (this is a temporary fix)
e742f99
@jbrestel
make sure to set the profilegraph help as it is used in a template
8a82937
@jbrestel
Merge branch 'master' of github.com:VEuPathDB/ApiCommonModel
a16eafb
@steve-fischer-200
fix eQTL query
f4aa3e7
@steve-fischer-200
use unpartitioned table for bfmv
8ef2f6a
@mvnural
move org_abbrev filter out of join condition to fix partition explosion.
d9425f2 
when the filter is on the join then it's not applied to the other joins against the transcript_attributes table.
@mvnural
add missing org_abbrev filter to IntronSupportLevel_p
56abee8
@steve-fischer-200
speed eQTL query
aee928a
@bobular
add Steve-ish modified HTML-structured maxRecommendedMsg
5aa5bd9
@bobular
Remove quotes from value interpolations
5ee43b5
@bobular
try another CDATA wrapper
eec2e9b
@bobular
remove quotes around maxRecommended too
55bec7f
@jbrestel
update y2h Category for internal question
314af4a
@jbrestel
Merge branch 'master' of github.com:VEuPathDB/ApiCommonModel
8a0f27b
@jbrestel
fix other datasetCategories (quant proteomics and longreadrnaseq)
0d4fe95
@bobular
Tweak organism gate message
f29ea09
@steve-fischer-200
fix interpro attr query
917fa40
@jbrestel
rna url query to use datasetdatasource
cb31e43
@jbrestel
Merge branch 'master' of github.com:VEuPathDB/ApiCommonModel
2217b1d
@steve-fischer-200
fix pathways queries and add tuning table
32192e5
@steve-fischer-200
filter on project_id
115fd3a
@steve-fischer-200
fix PathwayGenes TT
ab276ff
@steve-fischer-200
speed gene seq table query
9edf93d
@jbrestel
gene source_id and project not being returned correctly. fixes nc rna…
20d71e5 
… gene pages
@steve-fischer-200
comment out postCacheUpdateSql
036e7af
@steve-fischer-200
use unpartitioned for bfmv
987b289
@steve-fischer-200
use unpartitioned for postcacheupdate
0e3ab07
@steve-fischer-200
speed long read query
ad5b2d2
@steve-fischer-200
add questions to UniDB; fix some bugs
34d2b36
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7 participants

@bgajria @steve-fischer-200 @jbrestel @ryanrdoherty @mvnural @bobular