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Fix ID mismatch crash when arXiv submission year differs from publication year #1060

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Merged
pancetta merged 2 commits into from
Mar 15, 2026
Merged

Fix ID mismatch crash when arXiv submission year differs from publication year #1060

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Copilot Mar 15, 2026
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Fix arxiv_to_publications_correct.py: handle year mismatch between ar…
Copilot Mar 15, 2026
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9 changes: 5 additions & 4 deletions bin/arxiv_to_publications_correct.py
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Original file line number Diff line number Diff line change
Expand Up @@ -36,15 +36,16 @@
id = data['author'][0]['family'] + 'EtAl' + str(data['issued']['date-parts'][0][0])
else:
id = data['author'][0]['family'] + str(data['issued']['date-parts'][0][0])
assert id == id_db, f"ID generated with new DOI ({id}) is different than the original in database ({id_db})"
if id != id_db:
print(f'Note: ID generated with new DOI ({id}) differs from the original in database ({id_db}). Keeping original ID.')

entries = db.get_entry_dict()
assert entries[id]["ENTRYTYPE"] == 'unpublished', "original entry in bib file was NOT unpublished !"
db.entries.remove(entries[id])
assert entries[id_db]["ENTRYTYPE"] == 'unpublished', "original entry in bib file was NOT unpublished !"
db.entries.remove(entries[id_db])

bType, *rest1 = bib.split("{")
oldID, *rest2 = rest1[0].split(",")
bib = "{".join([bType] + [','.join([id]+rest2)] + rest1[1:])
bib = "{".join([bType] + [','.join([id_db]+rest2)] + rest1[1:])
bib_db = bibtexparser.loads(bib)
db.entries.extend(bib_db.get_entry_list())

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