{2023.06}[foss/2023a] snakemake v8.4.2 #281

trz42 · 2024-02-23T22:24:11Z

Adding snakemake/8.4.2.

SPDX license identifier: MIT

Missing packages:

11 out of 81 required modules missing:

* GitPython/3.1.40-GCCcore-12.3.0 (GitPython-3.1.40-GCCcore-12.3.0.eb)
* GLPK/5.0-GCCcore-12.3.0 (GLPK-5.0-GCCcore-12.3.0.eb)
* wrapt/1.15.0-gfbf-2023a (wrapt-1.15.0-gfbf-2023a.eb)
* CoinUtils/2.11.10-GCC-12.3.0 (CoinUtils-2.11.10-GCC-12.3.0.eb)
* Osi/0.108.9-GCC-12.3.0 (Osi-0.108.9-GCC-12.3.0.eb)
* MUMPS/5.6.1-foss-2023a-metis (MUMPS-5.6.1-foss-2023a-metis.eb)
* Clp/1.17.9-foss-2023a (Clp-1.17.9-foss-2023a.eb)
* Cgl/0.60.8-foss-2023a (Cgl-0.60.8-foss-2023a.eb)
* Cbc/2.10.11-foss-2023a (Cbc-2.10.11-foss-2023a.eb)
* PuLP/2.8.0-foss-2023a (PuLP-2.8.0-foss-2023a.eb)
* snakemake/8.4.2-foss-2023a (snakemake-8.4.2-foss-2023a.eb)

nessi-bot · 2024-02-23T22:24:15Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-02-23T22:24:15Z

Instance AWS-MC-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-02-23T22:24:15Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

trz42 · 2024-02-23T22:24:43Z

bot: help

nessi-bot · 2024-02-23T22:24:45Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command help from trz42
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

nessi-bot · 2024-02-23T22:24:45Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command help from trz42
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

nessi-bot · 2024-02-23T22:24:45Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command help from trz42
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

trz42 · 2024-02-23T22:27:28Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic

nessi-bot · 2024-02-23T22:27:30Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 6520, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 6521, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-23T22:27:30Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 135494, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)

nessi-bot · 2024-02-23T22:27:30Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 10753816, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 10753817, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-23T22:27:34Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.02/pr_281/6520

date	job status	comment
Feb 23 22:27:33 UTC 2024	submitted	job id `6520` awaits release by job manager
Feb 23 22:28:27 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 22:33:31 UTC 2024	running	job `6520` is running
Feb 23 23:24:57 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-6520.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1708730650.tar.gz` size: 42 MiB (45088514 bytes) entries: 1887 modules under 2023.06/software/linux/x86_64/generic/modules/all `Cbc/2.10.11-foss-2023a.lua` `Cgl/0.60.8-foss-2023a.lua` `Clp/1.17.9-foss-2023a.lua` `CoinUtils/2.11.10-GCC-12.3.0.lua` `GitPython/3.1.40-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `MUMPS/5.6.1-foss-2023a-metis.lua` `Osi/0.108.9-GCC-12.3.0.lua` `PuLP/2.8.0-foss-2023a.lua` `snakemake/8.4.2-foss-2023a.lua` `wrapt/1.15.0-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `Cbc/2.10.11-foss-2023a` `Cgl/0.60.8-foss-2023a` `Clp/1.17.9-foss-2023a` `CoinUtils/2.11.10-GCC-12.3.0` `GitPython/3.1.40-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `MUMPS/5.6.1-foss-2023a-metis` `Osi/0.108.9-GCC-12.3.0` `PuLP/2.8.0-foss-2023a` `snakemake/8.4.2-foss-2023a` `wrapt/1.15.0-gfbf-2023a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 23 23:24:57 UTC 2024	test result	(no tests yet)
Feb 24 06:44:21 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1708730650.tar.gz` to S3 bucket succeeded
Feb 24 07:12:15 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1708730650.tar.gz` downloaded to Stratum-0
Feb 24 07:13:15 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/3 to approve ingest
Feb 24 07:17:09 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1708730650.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/3
Feb 24 07:20:15 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1708730650.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2024-02-23T22:27:37Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.02/pr_281/135494

date	job status	comment
Feb 23 10:27:36 PM UTC 2024	submitted	job id `135494` awaits release by job manager
Feb 23 10:28:15 PM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 10:29:17 PM UTC 2024	running	job `135494` is running
Feb 23 11:38:34 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-135494.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1708731476.tar.gz` size: 41 MiB (44037612 bytes) entries: 1887 modules under 2023.06/software/linux/aarch64/generic/modules/all `Cbc/2.10.11-foss-2023a.lua` `Cgl/0.60.8-foss-2023a.lua` `Clp/1.17.9-foss-2023a.lua` `CoinUtils/2.11.10-GCC-12.3.0.lua` `GitPython/3.1.40-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `MUMPS/5.6.1-foss-2023a-metis.lua` `Osi/0.108.9-GCC-12.3.0.lua` `PuLP/2.8.0-foss-2023a.lua` `snakemake/8.4.2-foss-2023a.lua` `wrapt/1.15.0-gfbf-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `Cbc/2.10.11-foss-2023a` `Cgl/0.60.8-foss-2023a` `Clp/1.17.9-foss-2023a` `CoinUtils/2.11.10-GCC-12.3.0` `GitPython/3.1.40-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `MUMPS/5.6.1-foss-2023a-metis` `Osi/0.108.9-GCC-12.3.0` `PuLP/2.8.0-foss-2023a` `snakemake/8.4.2-foss-2023a` `wrapt/1.15.0-gfbf-2023a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 23 11:38:34 PM UTC 2024	test result	(no tests yet)
Feb 24 06:47:21 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1708731476.tar.gz` to S3 bucket succeeded
Feb 24 07:12:11 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1708731476.tar.gz` downloaded to Stratum-0
Feb 24 07:13:07 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/1 to approve ingest
Feb 24 07:17:05 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1708731476.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/1
Feb 24 07:18:23 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1708731476.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2024-02-23T22:27:37Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.02/pr_281/6521

date	job status	comment
Feb 23 22:27:36 UTC 2024	submitted	job id `6521` awaits release by job manager
Feb 23 22:28:25 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 22:33:30 UTC 2024	running	job `6521` is running
Feb 23 23:16:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-6521.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1708730173.tar.gz` size: 43 MiB (45332584 bytes) entries: 1887 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Cbc/2.10.11-foss-2023a.lua` `Cgl/0.60.8-foss-2023a.lua` `Clp/1.17.9-foss-2023a.lua` `CoinUtils/2.11.10-GCC-12.3.0.lua` `GitPython/3.1.40-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `MUMPS/5.6.1-foss-2023a-metis.lua` `Osi/0.108.9-GCC-12.3.0.lua` `PuLP/2.8.0-foss-2023a.lua` `snakemake/8.4.2-foss-2023a.lua` `wrapt/1.15.0-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Cbc/2.10.11-foss-2023a` `Cgl/0.60.8-foss-2023a` `Clp/1.17.9-foss-2023a` `CoinUtils/2.11.10-GCC-12.3.0` `GitPython/3.1.40-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `MUMPS/5.6.1-foss-2023a-metis` `Osi/0.108.9-GCC-12.3.0` `PuLP/2.8.0-foss-2023a` `snakemake/8.4.2-foss-2023a` `wrapt/1.15.0-gfbf-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 23 23:16:49 UTC 2024	test result	(no tests yet)
Feb 24 06:44:40 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1708730173.tar.gz` to S3 bucket succeeded
Feb 24 07:12:13 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1708730173.tar.gz` downloaded to Stratum-0
Feb 24 07:13:11 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/2 to approve ingest
Feb 24 07:17:07 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1708730173.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/2
Feb 24 07:19:08 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1708730173.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

nessi-bot · 2024-02-23T22:27:39Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.02/pr_281/10753816

Failed with 🤷

SINGULARITY_CACHEDIR=/cluster/projects/nn9992k/pilot.nessi.no/container_cachedir/x86_64
Pulling container image from docker://ghcr.io/eessi/build-node:debian11 to /localscratch/10753816/NESSI/eessi.7NVgpGjIX2/ghcr.io_eessi_build_node_debian11.sif
ESC[34mINFO:   ESC[0m Environment variable SINGULARITY_TMPDIR is set, but APPTAINER_TMPDIR is preferred
INFO:    Environment variable SINGULARITY_CACHEDIR is set, but APPTAINER_CACHEDIR is preferred
INFO:    Converting OCI blobs to SIF format
FATAL:   While making image from oci registry: error fetching image to cache: while building SIF from layers: unable to create new build: while ensuring correct compression algorithm: while creating squashfs: create command failed: signal: illegal instruction (core dumped):

date	job status	comment
Feb 23 10:27:38 PM UTC 2024	submitted	job id `10753816` awaits release by job manager
Feb 23 10:28:35 PM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 10:29:40 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-10753816.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts Details No artefacts were created or found.
Feb 23 10:29:40 PM UTC 2024	test result	(no tests yet)

nessi-bot · 2024-02-23T22:27:45Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.02/pr_281/10753817

date	job status	comment
Feb 23 10:27:44 PM UTC 2024	submitted	job id `10753817` awaits release by job manager
Feb 23 10:28:37 PM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 10:29:39 PM UTC 2024	running	job `10753817` is running
Feb 23 11:23:32 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10753817.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1708730535.tar.gz` size: 43 MiB (45398652 bytes) entries: 1887 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Cbc/2.10.11-foss-2023a.lua` `Cgl/0.60.8-foss-2023a.lua` `Clp/1.17.9-foss-2023a.lua` `CoinUtils/2.11.10-GCC-12.3.0.lua` `GitPython/3.1.40-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `MUMPS/5.6.1-foss-2023a-metis.lua` `Osi/0.108.9-GCC-12.3.0.lua` `PuLP/2.8.0-foss-2023a.lua` `snakemake/8.4.2-foss-2023a.lua` `wrapt/1.15.0-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Cbc/2.10.11-foss-2023a` `Cgl/0.60.8-foss-2023a` `Clp/1.17.9-foss-2023a` `CoinUtils/2.11.10-GCC-12.3.0` `GitPython/3.1.40-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `MUMPS/5.6.1-foss-2023a-metis` `Osi/0.108.9-GCC-12.3.0` `PuLP/2.8.0-foss-2023a` `snakemake/8.4.2-foss-2023a` `wrapt/1.15.0-gfbf-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 23 11:23:32 PM UTC 2024	test result	(no tests yet)
Feb 24 06:44:29 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1708730535.tar.gz` to S3 bucket succeeded
Feb 24 07:12:19 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1708730535.tar.gz` downloaded to Stratum-0
Feb 24 07:13:22 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/5 to approve ingest
Feb 24 07:17:14 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1708730535.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/5
Feb 24 07:22:23 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1708730535.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

trz42 · 2024-02-23T22:37:11Z

bot: build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell

nessi-bot · 2024-02-23T22:37:13Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-02-23T22:37:13Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-02-23T22:37:14Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Saga repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 10753824, for details & status see {2023.06}[foss/2023a] snakemake v8.4.2 #281 (comment)

nessi-bot · 2024-02-23T22:37:20Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.02/pr_281/10753824

date	job status	comment
Feb 23 10:37:19 PM UTC 2024	submitted	job id `10753824` awaits release by job manager
Feb 23 10:37:51 PM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 23 10:38:54 PM UTC 2024	running	job `10753824` is running
Feb 23 11:35:48 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10753824.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1708731300.tar.gz` size: 43 MiB (45378852 bytes) entries: 1887 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `Cbc/2.10.11-foss-2023a.lua` `Cgl/0.60.8-foss-2023a.lua` `Clp/1.17.9-foss-2023a.lua` `CoinUtils/2.11.10-GCC-12.3.0.lua` `GitPython/3.1.40-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `MUMPS/5.6.1-foss-2023a-metis.lua` `Osi/0.108.9-GCC-12.3.0.lua` `PuLP/2.8.0-foss-2023a.lua` `snakemake/8.4.2-foss-2023a.lua` `wrapt/1.15.0-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `Cbc/2.10.11-foss-2023a` `Cgl/0.60.8-foss-2023a` `Clp/1.17.9-foss-2023a` `CoinUtils/2.11.10-GCC-12.3.0` `GitPython/3.1.40-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `MUMPS/5.6.1-foss-2023a-metis` `Osi/0.108.9-GCC-12.3.0` `PuLP/2.8.0-foss-2023a` `snakemake/8.4.2-foss-2023a` `wrapt/1.15.0-gfbf-2023a` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 23 11:35:48 PM UTC 2024	test result	(no tests yet)
Feb 24 06:44:52 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1708731300.tar.gz` to S3 bucket succeeded
Feb 24 07:12:17 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1708731300.tar.gz` downloaded to Stratum-0
Feb 24 07:13:18 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/4 to approve ingest
Feb 24 07:17:12 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1708731300.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/4
Feb 24 07:21:02 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1708731300.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

trz42 · 2024-02-23T22:38:38Z

bot: status

nessi-bot · 2024-02-23T22:38:41Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command status from trz42
- expanded format: status
handling command status resulted in:

nessi-bot · 2024-02-23T22:38:41Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command status from trz42
- expanded format: status
handling command status resulted in:

nessi-bot · 2024-02-23T22:38:41Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command status from trz42
- expanded format: status
handling command status resulted in:

nessi-bot · 2024-02-23T22:38:42Z

This is the status of all the bot: build commands:

arch	result	date	status	url
x86_64-generic	😢 FAILURE	Feb 23 10:29:40 PM UTC 2024	finished	#281 (comment)

nessi-bot · 2024-02-23T22:38:42Z

This is the status of all the bot: build commands:

arch	result	date	status	url
aarch64-generic	😢 FAILURE	Feb 23 10:29:40 PM UTC 2024	finished	#281 (comment)

nessi-bot · 2024-02-23T22:38:43Z

This is the status of all the bot: build commands:

arch	result	date	status	url
x86_64-generic	😢 FAILURE	Feb 23 10:29:40 PM UTC 2024	finished	#281 (comment)

trz42 · 2024-02-24T06:03:13Z

bot: status

nessi-bot · 2024-02-24T06:03:15Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command status from trz42
- expanded format: status

nessi-bot · 2024-02-24T06:03:15Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command status from trz42
- expanded format: status

nessi-bot · 2024-02-24T06:03:16Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command status from trz42
- expanded format: status

trz42 · 2024-02-24T06:41:51Z

Checklist before starting deployment (setting bot:deploy label):

Check if the SPDX license identifier is provided
Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

trz42 · 2024-02-24T06:48:53Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each staged tarball was a PR for approval/rejection opened
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; \
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/snakemake/8.4.2* \
      aarch64/generic/{software,modules/all}/snakemake/8.4.2*

log

-rw-r--r-- 1 cvmfs cvmfs 4781 Feb 24 00:34 aarch64/generic/modules/all/snakemake/8.4.2-foss-2023a.lua
-rw-rw-r-- 1 cvmfs cvmfs 4781 Feb 24 00:14 x86_64/amd/zen2/modules/all/snakemake/8.4.2-foss-2023a.lua
-rw-rw-r-- 1 cvmfs cvmfs 4780 Feb 24 00:22 x86_64/generic/modules/all/snakemake/8.4.2-foss-2023a.lua
-rw-rw-r-- 1 cvmfs cvmfs 4788 Feb 24 00:31 x86_64/intel/broadwell/modules/all/snakemake/8.4.2-foss-2023a.lua
-rw-rw-r-- 1 cvmfs cvmfs 4793 Feb 24 00:19 x86_64/intel/skylake_avx512/modules/all/snakemake/8.4.2-foss-2023a.lua

aarch64/generic/software/snakemake/8.4.2-foss-2023a:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:30 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:34 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:27 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 24 00:31 lib64 -> lib

x86_64/amd/zen2/software/snakemake/8.4.2-foss-2023a:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:10 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:14 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:06 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 24 00:10 lib64 -> lib

x86_64/generic/software/snakemake/8.4.2-foss-2023a:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:18 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:22 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:14 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 24 00:18 lib64 -> lib

x86_64/intel/broadwell/software/snakemake/8.4.2-foss-2023a:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:27 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:32 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:24 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 24 00:28 lib64 -> lib

x86_64/intel/skylake_avx512/software/snakemake/8.4.2-foss-2023a:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:15 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:19 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 24 00:12 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 24 00:16 lib64 -> lib

poksumdo

All done. Good test for EESSI/eessi-bot-software-layer#254 and updated NESSI bot instances.

{2023.06}[foss/2023a] snakemake v8.4.2

65acdec

trz42 added the NESSI/2023.06 label Feb 23, 2024

trz42 added the bot:deploy label Feb 24, 2024

trz42 added the ingested label Feb 24, 2024

poksumdo approved these changes Feb 24, 2024

View reviewed changes

poksumdo merged commit 7478ce5 into NorESSI:nessi.no-2023.06 Feb 24, 2024

trz42 mentioned this pull request Feb 24, 2024

make upload directory in S3 bucket configurable EESSI/eessi-bot-software-layer#254

Merged

{2023.06}[foss/2023a] snakemake v8.4.2 #281

{2023.06}[foss/2023a] snakemake v8.4.2 #281

Uh oh!

Conversation

trz42 commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024

Uh oh!

trz42 commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

trz42 commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

trz42 commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited by trz42 Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

trz42 commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

nessi-bot bot commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024

Uh oh!

nessi-bot bot commented Feb 23, 2024

trz42 commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited by trz42

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

nessi-bot bot commented Feb 23, 2024 •

edited

Loading

trz42 commented Feb 24, 2024 •

edited

Loading

trz42 commented Feb 24, 2024 •

edited

Loading