Feature/ndrs2 2031/sheffield brca regex updates#146
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shilpigoeldev merged 13 commits intodevelopfrom Mar 24, 2025
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shilpigoeldev
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Feb 21, 2025
shilpigoeldev
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Feb 21, 2025
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@shilpigoeldev please see email before signing this off. I didn't have time to complete the checks after making the updates so please could you do this first (instructions are in email). Thank you! |
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I have now run the importer locally and can confirm the counts tally with Fiona approved ones and variants captured look ok , there were some changes needed in the test file which I have done. Review comments have been incorporated and changes look good. |
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LGTM, and counts tally after changes !!
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This PR includes
As part of updating the panels, the way the code detects genes for targeted tests was also changed. This means that it should no longer use panels, but instead detect genes in the genotype and karyotypingmethod columns for targeted tests.
A QA has been completed and my counts now match with Fiona's manual counts.