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KazeemHamzatKazeemHamzat
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Feature-IOPS-2378-Non-WGS-Test-Order-Form-Out-of-Country (#44)
* Add SR, Task & Condition Add SR, Task & Condition * Add Patient, & Specimen Resource Add Patient, & Specimen Resource Update SR & Task * Update CodeSystem-Genomics-task-statusReason Added based on recommendation on PR for F/Up Test Types(#48) * Add BodyStructure Resource, and Separate Obs-Multiple Tumor Add BodyStructure Resource, and Separate Obs-Multiple Tumor * Add Neoplastic Cell Obs Add Neoplastic Cell Obs * Update OBS-NeoplasticCell, Cellularity & Necrosis Update OBS-NeoplasticCell, Cellularity & Necrosis
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‎BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example.json‎

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{
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"resourceType": "BodyStructure",
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"id": "BodyStructure-SpecimenBodySiteLocation-Example",
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"morphology": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "369755005",
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"display": "Multiple tumors (qualifier value)"
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}
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]
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},
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"location": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "76752008",
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"display": "Breast structure (body structure)"
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}
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]
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},
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"patient": {
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"reference": "Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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}
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}

‎CodeSystem/CodeSystem-Genomics-task-statusReason.json‎

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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "AwaitingSpecimen",
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"display": "Awaiting Specimen"
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},
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{
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"code": "AwaitingRoDAndSpecimen",
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"display": "Awaiting Record of Discussion and Specimen"

‎Condition/Condition-BreastCancer-Example.json‎

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{
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"resourceType": "Condition",
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"id": "Condition-BreastCancer-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "active",
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"display": "Active"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "provisional",
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"display": "Provisional"
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}
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]
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},
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "134405005",
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"display": "Suspected breast cancer"
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}
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]
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},
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"subject": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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}
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}

‎Observation/Observation-CellularityKayBurbridge-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-CellularityKayBurbridge-Example",
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"status": "final",
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"code": {
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"text":"Cellularity"
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"interpretation": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
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"code": "H",
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"display": "High"
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}
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]
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}
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],
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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}

‎Observation/Observation-NecrosisKayBurbridge-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-NecrosisKayBurbridge-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "405921002",
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"display": "Percentage of neoplasm involved by necrosis (observable entity)"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"valueQuantity": {
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"value": 5,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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}

‎Observation/Observation-NeoplasticCellKayBurbridge-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-NeoplasticCellKayBurbridge-Example",
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"status": "final",
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"code": {
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"text": "Approximate Neoplastic cell % in sample"
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"valueQuantity": {
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"value": 25,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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}

‎Observation/Observation-TumourTypeKayBurbridge-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-TumourTypeKayBurbridge-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "14799000",
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"display": "Neoplasm, metastatic (morphologic abnormality)"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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}

‎Patient/Patient-KayBurbridge-Example.json‎

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{
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"resourceType": "Patient",
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"id": "Patient-KayBurbridge-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
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"valueCode": "F"
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
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"code": "A",
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"display": "White - British"
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}
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]
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}
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}
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],
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
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"version": "2.2.0",
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"code": "01",
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"display": "Number present and verified"
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}
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]
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}
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}
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]
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},
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{
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "RD13423",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RLU"
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}
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}
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}
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],
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"name": [
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{
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"given": [
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"Kay"
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],
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"family": "Burbridge"
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}
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],
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"gender": "female",
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"birthDate": "1983-06-02",
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"deceasedBoolean": true,
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"address": [
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{
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"line": [
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"106 Telegraph Road",
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"Claygate",
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"Milton Keynes"
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],
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"postalCode": "HR5 3PR"
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}
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],
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"generalPractitioner": [
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/gmp-number",
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"value": "G9999999"
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},
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"display": "Dr. Aero Smith"
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},
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/ODS-code",
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"value": "TP123"
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},
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"display": "Test GP Practice"
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}
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],
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"link": [
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{
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"other": {
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"reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303541"
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},
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"type": "seealso"
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}
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]
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}

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