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KazeemHamzatKazeemHamzat
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Feature-IOPS-2339-Non WGS Test Order Form-Cascade-Testing-Scenario (#39)
* Add SR & OBS Examples Add SR & OBS Examples * Revert to odeSystem/UKCore-PracticeSettingCode Reverting to CodeSystem/UKCore-PracticeSettingCode * Add Task Resource-Completed Add Task Resource-Completed * Add DiagReport & Specimen Add DiagReport & Specimen Collector and CollectedTime * Update DiagReport & Specimen Collector Update DiagReport & Specimen Collector * Update DiagnosticReport-FayMutlowGeneticReport-Example.json Update DiagReport with updated specimen info * Update DiagnosticReport-FayMutlowGeneticReport-Example.json Update code for Org. type * Change Test Code for Task.Output Change Test Code for Task.Output * Update Specimen-FayMutlowBloodEDTA-Example.json Change System fihr.leedsth.nhs.uk * Update DiagnosticReport Category Update DiagnosticReport Category * Update to Main on Task Profile Update to Main on Task Profile * Update Diag Resource Update Report format
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‎DiagnosticReport/DiagnosticReport-FayMutlowGeneticReport-Example.json‎

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{
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"resourceType": "DiagnosticReport",
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"id": "DiagnosticReport-FayMutlowGeneticReport-Example",
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"identifier": [
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{
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"system": "https://newcastle-hospitsls.nhs.uk/nwglh/lims",
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"value": "FHGenomicReport",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RTD"
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}
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}
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}
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],
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"basedOn": [
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{
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"reference": "ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example"
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}
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],
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"status": "final",
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"category": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v2-0074",
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"code": "GE",
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"display": "Genetics"
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}
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]
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}
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],
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1054161000000101",
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"display": "Genetic report"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-FayMutlow-Example"
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},
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"issued": "2023-10-09T09:45:00Z",
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"performer": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RTD"
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}
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}
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],
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"specimen": [
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{
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"reference": "Specimen/Specimen-FayMutlowBloodEDTA-Example"
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}
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],
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"conclusionCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "398036000",
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"display": "Familial hypercholesterolemia"
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}
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]
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}
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],
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"presentedForm": [
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{
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"contentType": "application/pdf",
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"language": "en-GB",
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"url":"https://ytlqh0.axshare.com/?id=swl7sq&p=view_report",
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"size": 43272,
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"title": "Genomic Report for Fay Mutlow",
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"creation": "2023-10-22"
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}
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]
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}

‎Observation/Observation-DutchLipidScore-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-DutchLipidScore-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "872541000000104",
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"display": "Dutch Lipid Clinic Network diagnostic criteria for familial hypercholesterolaemia score (observable entity)"
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}
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],
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"text": "Dutch or (Welsh) Lipid score"
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},
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"subject": {
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"reference": "Patient/Patient-FayMutlow-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307806"
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}
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},
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"effectiveDateTime": "2023-08-05",
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"valueInteger": 7
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}

‎Observation/Observation-QueryXanthoma-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-QueryXanthoma-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "75594004",
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"display": "Xanthomatous deposition"
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}
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],
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"text": "Physical Characteristics = query xanthoma"
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},
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"subject": {
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"reference": "Patient/Patient-FayMutlow-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307806"
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}
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},
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"effectiveDateTime": "2023-08-05"
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}

‎Observation/Observation-SimonBroomeCriteria-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-SimonBroomeCriteria-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "149611000000100",
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"display": "Simon Broome diagnostic criteria for familial hypercholesterolaemia result"
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}
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],
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"text": "Simon Broome Criteria"
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},
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"subject": {
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"reference": "Patient/Patient-FayMutlow-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307806"
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}
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},
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"effectiveDateTime": "2023-08-05",
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"valueString": "Suspected FH"
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}

‎Patient/Patient-FayMutlow-Example.json‎

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{
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"resourceType": "Patient",
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"id": "Patient-FayMutlow-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
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"valueCode": "F"
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
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"code": "A",
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"display": "White - British"
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}
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]
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}
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}
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],
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307806",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
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"version": "2.2.0",
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"code": "01",
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"display": "Number present and verified"
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}
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]
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}
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}
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]
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},
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{
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "RR12437",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RGD12"
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}
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}
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}
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],
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"name": [
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{
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"given": [
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"Fay"
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],
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"family": "Mutlow"
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}
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],
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"gender": "female",
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"birthDate": "1990-06-01",
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"deceasedBoolean": false,
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"address": [
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{
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"line": [
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"Union Mills",
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"9 Dewsbury Rd",
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"Leeds"
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],
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"postalCode": "LSD11 5DD"
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}
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],
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"generalPractitioner": [
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/gmp-number",
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"value": "G9999999"
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},
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"display": "Dr. Test GP"
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},
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/ODS-code",
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"value": "B86012"
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},
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"display": "LEEDS CITY MEDICAL PRACTICE"
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}
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]
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}

‎PractitionerRole/PractitionerRole-LoisLane-Example.json‎

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{
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"resourceType": "PractitionerRole",
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"id": "PractitionerRole-LoisLane-Example",
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"practitioner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999998"
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},
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"display": "Phletobomist-Lois Lane"
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},
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"organization": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RTD"
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},
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"display": "THE NEWCASTLE UPON TYNE HOSPITALS NHS FOUNDATION TRUST"
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},
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"specialty": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
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"code": "823",
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"display": "Haematology"
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}
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]
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}
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],
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"telecom": [
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{
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"system": "phone",
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"value": "0191241 8787 /8775 / 8754"
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},
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{
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"system": "email",
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"value": "NUTH.DNA@nhs.net"
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}
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]
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}

‎PractitionerRole/PractitionerRole-MarySmith-Example.json‎

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{
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"resourceType": "PractitionerRole",
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"id": "PractitionerRole-MarySmith-Example",
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"practitioner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999998"
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},
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"display": "RN. Mary Smith"
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},
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"organization": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RGD12"
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},
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"display": "ST JAMES'S UNIVERSITY HOSPITAL"
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},
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"specialty": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
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"code": "302",
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"display": "Endocrinology and Diabetes"
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}
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]
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}
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],
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"telecom": [
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{
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"system": "phone",
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"value": "0112577851"
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},
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{
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"system": "email",
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"value": "lipidclinicstjames@nhs.net"
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},
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{
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"system": "email",
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"value": "clinicalgeneticsstjames@nhs.net",
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/contactpoint-comment",
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"valueString": "reporting"
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}
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]
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}
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]
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}

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