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KazeemHamzatKazeemHamzat
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Feature-IOPS-2381-Non-WGS-Test-Order-Form-Follow-up-Test-Types (#48)
* Add SR & Task Resources Add SR & Task Resources * Add DR Resource & Updates to Task Resources Add DR Resource & Updates to Task Resources * Update Task-NonWGSRareDiseaseTestOrderAccepted-FollowupTes Typo: Removed Types form ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example
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‎DiagnosticReport/DiagnosticReport-AnitaLamberts-Example.json‎

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{
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"resourceType": "DiagnosticReport",
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"id": "DiagnosticReport-AnitaLamberts-Example",
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"identifier": [
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{
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"system": "https://www.guysandstthomas.nhs.uk/SEGLH/lims",
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"value": "FHGenomicReport",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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}
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}
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}
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],
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"basedOn": [
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{
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example"
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}
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],
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"status": "final",
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"category": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v2-0074",
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"code": "GE",
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"display": "Genetics"
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}
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]
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}
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],
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1054161000000101",
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"display": "Genetic report"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-AnitaLamberts-Example"
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},
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"issued": "2023-11-24T09:45:00Z",
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"performer": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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}
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}
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],
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"specimen": [
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{
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"reference": "Specimen/Specimen-BloodEDTA-Example"
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}
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],
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"presentedForm": [
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{
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"contentType": "application/pdf",
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"language": "en-GB",
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"url":"https://o719on.axshare.com/?id=8aol33&p=introduction&g=1",
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"size": 43272,
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"title": "Genomic Report for Anita Lamberts",
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"creation": "2023-11-24"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs",
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"display": "Rare Disease - Non-WGS"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R187",
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"display": "Cystic Fibrosis"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-AnitaLamberts-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303649"
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}
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},
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"authoredOn": "2023-11-01T10:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103693007",
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"display": "Diagnostic procedure"
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}
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]
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}
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],
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"performer": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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}
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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},
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{
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"reference": "Observation/Observation-RiskOfInfection-Example"
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}
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],
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"specimen": [
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{
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"display": "Specimen to be provided later"
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}
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],
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"note": [
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{
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"text": "No family history of genomic testing"
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},
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms / For example: Adult with CT-proven bronchiectasis, chronic suppurative chest infection with colonisation by Pseudomonas and Staph aureus"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example",
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"basedOn": [
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{
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example"
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}
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],
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs",
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"display": "Rare Disease - Non-WGS"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R65.1",
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"display": "Aminoglycoside exposure posing risk to hearing"
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}
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],
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"text": "Follow Up Test requested to aid interpretation. M code modified to: R65.1"
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},
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"subject": {
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"reference": "Patient/Patient-AnitaLamberts-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303649"
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}
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},
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"authoredOn": "2023-11-10T10:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-AndrewSmith-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103693007",
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"display": "Diagnostic procedure"
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}
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]
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}
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],
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"performer": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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}
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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},
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{
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"reference": "Observation/Observation-RiskOfInfection-Example"
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}
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],
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"specimen": [
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{
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"reference": "Specimen/Specimen-BloodEDTA-Example"
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}
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],
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"note": [
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{
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"text": "No family history of genomic testing"
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},
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms / For example: Adult with CT-proven bronchiectasis, chronic suppurative chest infection with colonisation by Pseudomonas and Staph aureus. Intital test ordered for Cystic Fibrosis."
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}
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]
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}

‎Task/Task-NonWGSRareDiseaseTestOrderAccepted-FollowupTest-Example.json‎

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{
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"resourceType": "Task",
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"id": "Task-NonWGSRareDiseaseTestOrderAccepted-FollowupTest-Example",
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"status": "accepted",
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"intent": "order",
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
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"code": "ProcessGenomicTestRequest",
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"display": "Process Genomic Test Request"
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}
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]
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},
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"focus": {
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example"
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},
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"for": {
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"reference": "Patient/Patient-AnitaLamberts-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303649"
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}
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},
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"authoredOn": "2023-11-01T10:00:00Z",
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"lastModified": "2023-11-02T11:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
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},
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"owner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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},
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"display": "GUY'S AND ST THOMAS' NHS FOUNDATION TRUST"
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},
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"note": [
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{
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"text": "Optional Free Text field to record any additional details"
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}
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]
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}

‎Task/Task-NonWGSRareDiseaseTestOrderCancelled-FollowupTest-Example.json‎

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{
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"resourceType": "Task",
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"id": "Task-NonWGSRareDiseaseTestOrderCancelled-FollowupTest-Example",
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"status": "cancelled",
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"statusReason": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics",
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"code": "DecisionNotToProgressWithTestRequest",
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"display": "Decision Not To Progress With Test Request"
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}
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]
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},
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"intent": "order",
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
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"code": "Interpretation",
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"display": "Interpretation"
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}
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]
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},
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"focus": {
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example"
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},
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"for": {
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"reference": "Patient/Patient-AnitaLamberts-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303649"
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}
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},
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"authoredOn": "2023-11-01T10:00:00Z",
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"lastModified": "2023-11-10T11:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
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},
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"owner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RJ1"
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},
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"display": "GUY'S AND ST THOMAS' NHS FOUNDATION TRUST"
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},
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"note": [
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{
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"text": "Follow Up Test to be requested to aid interpretation. Request a new Test with M code R65.1"
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}
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]
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}

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