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KazeemHamzatKazeemHamzat
authored
Feature-IOPS-2382-Non-WGS-Test-Order-Form-Cancellation/Mark-in-Error (#54)
* Add SR, OBS & Task Resources Add SR, OBS & Task Resources * Add Prov. Resource & Update SR Add Prov. Resource & Update SR * Update Task Resource & CodeSystem-Genomics-task-statusReason Update Task Resource & CodeSystem-Genomics-task-statusReason * Update CodeSystem-Genomics-task-statusReason Fixing Typo Error in Code Entry
1 parent 807bade commit 33086bf

6 files changed

Lines changed: 415 additions & 1 deletion

‎CodeSystem/CodeSystem-Genomics-task-statusReason.json‎

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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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{
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"code": "SpecimenQualityNotOK",
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"display": "Specimen Quality Not OK"
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},
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{
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"code": "TestNoLongerRequired",
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"display": "Test No Longer Required"
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},
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{
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"code": "MultipleTestRequestedOnTheSamePatient",
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"display": "Multiple Test Requested On The Same Patient(only one test required)"
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},
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{
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"code": "DecisionNotToProgressWithTestRequest",
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"display": "Decision Not To Progress With Test Request"
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},
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{
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"code": "TestCouldNotBeDeliveredDueToProcessFailures",
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"display": "Test Could Not Be Delivered Due To Process Failures"
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},
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{
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"code": "WrongPatient(Mark-in-Error)",
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"display": "Wrong Patient (Mark-in-Error)"
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},
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{
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"code": "SampleAlignedToWrongPatient(Mark-in-Error)",
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"display": "Sample Aligned To Wrong Patient (Mark-in-Error)"
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},
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{
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"code": "PatienceChoiceIncorrectlyRecorded(WGS Only)-Mark-in-Error",
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"display": "Patience Choice Incorrectly Recorded (WGS Only)-Mark-in-Error"
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},
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{
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"code": "CorrectionOfClinicalData(Mark-in-Error)",
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"display": "Correction Of Clinical Data (Mark-in-Error)"
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}
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]
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}

‎Observation/Observation-NatureAndAgeOfHearingLoss-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-NatureAndAgeOfHearingLoss-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R67.1",
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"display": "Monogenic hearing loss"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-MeirLieberman-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"effectiveDateTime": "2023-08-05",
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"component": [
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{
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "95820000",
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"display": "Bilateral hearing loss (disorder)"
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}
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]
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},
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"valueString": "hearing loss since childhood"
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}
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]
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}

‎Provenance/Provenance-NonWGSTestOrderFormCancellation-Example.json‎

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{
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"resourceType": "Provenance",
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"id": "Provenance-NonWGSTestOrderFormCancellation-Example",
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"target": [
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{
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-MarkInErrorUpdated-Example"
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}
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],
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"recorded": "2023-08-08T15:43:00Z",
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"reason": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v3-ActReason",
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"code": "NOREQ",
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"display": "no longer required for treatment"
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}
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]
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}
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],
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"activity": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v3-DataOperation",
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"code": "CANCEL",
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"display": "cancel"
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}
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]
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},
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"agent": [
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{
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"type": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/provenance-participant-type",
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"code": "author",
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"display": "Author"
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}
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]
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},
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"who": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999997"
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}
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}
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}
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],
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"entity": [
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{
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"role": "source",
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"what": {
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example"
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}
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}
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],
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"signature": [
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{
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"type": [
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{
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"system": "urn:iso-astm:E1762-95:2013",
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"code": "1.2.840.10065.1.12.1.15",
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"display": "Addendum Signature"
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}
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],
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"when": "2023-08-08T15:43:00Z",
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"who": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999997"
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}
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},
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"data": "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"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrderForm-Cancellation-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs",
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"display": "Rare Disease - Non-WGS"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R67.1",
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"display": "Monogenic hearing loss"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-MeirLieberman-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"authoredOn": "2023-08-05T10:08:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103693007",
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"display": "Diagnostic procedure"
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}
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]
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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},
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{
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"reference": "Observation/Observation-RiskOfInfection-Example"
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},
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{
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"reference": "Observation/Observation-NatureAndAgeOfHearingLoss-Example"
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}
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],
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"specimen": [
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{
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"display": "Specimen/Specimen-BloodEDTA-Example"
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}
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],
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"note": [
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms Patient in need of test...example"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example",
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"meta": {
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"versionId": "2",
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"lastUpdated": "2023-08-08T15:43:00Z"
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},
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "revoked",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs",
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"display": "Rare Disease - Non-WGS"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R67.1",
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"display": "Monogenic hearing loss"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-MeirLieberman-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"authoredOn": "2023-08-08T15:43:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103693007",
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"display": "Diagnostic procedure"
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}
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]
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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},
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{
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"reference": "Observation/Observation-RiskOfInfection-Example"
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},
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{
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"reference": "Observation/Observation-NatureAndAgeOfHearingLoss-Example"
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}
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],
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"specimen": [
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{
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"display": "Specimen/Specimen-BloodEDTA-Example"
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}
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],
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"note": [
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{
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"text": "Test no longer required."
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},
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms Patient in need of test...example"
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}
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],
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"relevantHistory": [
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{
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"reference": "Provenance/Provenance-ServiceRequest-NonWGSTestOrderFormCancellation-Example"
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}
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]
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}

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