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KazeemHamzatKazeemHamzat
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Feature-IOPS-2379-Non-WGS-Test-Order-Form-Variant-Reinterpretation (#45)
* Add SR & Task Add SR & Task * Update SR, Task, and add Patient-SalimaPomfrets-Example Update SR, Task, and add Patient-SalimaPomfrets-Example * Update ServiceRequest-NonWGSTestOrder-VariantReinterpretation Add text no sample required.
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‎Patient/Patient-SalimaPomfrets-Example.json‎

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{
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"resourceType": "Patient",
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"id": "Patient-SalimaPomfrets-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
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"valueCode": "F"
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
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"code": "A",
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"display": "White - British"
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}
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]
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}
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}
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],
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303444",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
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"version": "2.2.0",
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"code": "01",
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"display": "Number present and verified"
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}
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]
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}
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}
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]
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},
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{
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "RD819674",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RD8"
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}
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}
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}
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],
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"name": [
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{
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"given": [
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"Salima"
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],
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"family": "Pomfrets"
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}
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],
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"gender": "female",
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"birthDate": "1993-11-27",
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"deceasedBoolean": false,
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"address": [
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{
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"line": [
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"1 How lane,",
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"Chipstead, Wolvertom",
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"Milton Keynes"
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],
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"postalCode": "TM10 8AM"
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}
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],
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"generalPractitioner": [
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/gmp-number",
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"value": "G9999999"
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},
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"display": "Dr. Aero Smith"
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},
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/ODS-code",
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"value": "AP123"
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},
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"display": "123 Test Practice"
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}
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],
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"link": [
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{
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"other": {
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"reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303444"
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},
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"type": "seealso"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example",
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"basedOn": [
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{
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"reference": "ServiceReques/ServiceRequest-NonWGSTestOrderForm-SyndromicEpilepsy-Example"
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}
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],
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R442",
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"display": "Variant Re-interpretation"
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}
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]
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},
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"orderDetail": [
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{
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R59",
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"display": "Early onset or syndromic epilepsy"
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}
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]
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}
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],
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"subject": {
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"reference": "Patient/Patient-SalimaPomfrets-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303444"
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}
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},
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"authoredOn": "2023-10-01T10:08:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "261004008",
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"display": "Diagnostic"
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}
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]
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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}
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],
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"note": [
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{
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"text": "No sample required."
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},
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{
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"text": "No family history of genomic testing"
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},
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms/ For example: new evidence available that will likely change the classification of the variant- identification of additional patient(s) with the same genetic variant"
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}
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]
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}

‎Task/Task-NonWGSTestOrderAccepted-VariantReinterpretation-Example.json‎

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{
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"resourceType": "Task",
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"id": "Task-NonWGSTestOrderAccepted-VariantReinterpretation-Example",
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"status": "accepted",
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"intent": "order",
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
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"code": "ProcessGenomicTestRequest",
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"display": "Process Genomic Test Request"
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}
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]
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},
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"focus": {
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example"
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},
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"for": {
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"reference": "Patient/Patient-SalimaPomfrets-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303444"
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}
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},
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"authoredOn": "2023-10-01T10:08:00Z",
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"lastModified": "2023-10-02T11:30:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
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},
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"owner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RQ3"
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},
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"display": "BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST"
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},
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"note": [
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{
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"text": "Optional Free Text field to record any additional details"
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}
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]
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}

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