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1. SQuAPP SQuAPP Public

   Shiny App allows streamlined analysis of multiple levels of proteomics data.

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2. RoLiM RoLiM Public

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3. ProteoForge_Analysis ProteoForge_Analysis Public

   All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".

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4. pxseek pxseek Public

   Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.

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5. Library-Filtering Library-Filtering Public

   Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.

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6. Analysis_of_QuEStVar_Manuscript Analysis_of_QuEStVar_Manuscript Public

   Analysis snapshot of the "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer cell lines and presents a general approach to investigating biol…

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