Remove debugging from nimble

bbimber · bbimber · commit c963f061fab7 · 2023-11-26T07:25:06.000-08:00
diff --git a/singlecell/resources/queries/singlecell/duplicatePrototypes.query.xml b/singlecell/resources/queries/singlecell/duplicatePrototypes.query.xml
@@ -8,10 +8,10 @@
                         <columnTitle>Readset Id</columnTitle>
                     </column>
                     <column columnName="minRowId">
-                        <columnTitle>Row Id</columnTitle>
+                        <columnTitle>First Row Id</columnTitle>
                     </column>
                     <column columnName="minAnalysisId">
-                        <columnTitle>Analysis Id</columnTitle>
+                        <columnTitle>First Analysis Id</columnTitle>
                     </column>
                     <column columnName="totalPrototypes">
                         <columnTitle>Total Prototypes</columnTitle>
diff --git a/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java b/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java
@@ -586,7 +586,6 @@ private boolean runUsingDocker(List<String> nimbleArgs, PipelineStepOutput outpu
             dockerWriter.println(StringUtils.join(nimbleArgs, " "));
             dockerWriter.println("EXIT_CODE=$?");
             dockerWriter.println("echo 'Exit code: '$?");
-            dockerWriter.println("ls /work");
             dockerWriter.println("exit $EXIT_CODE");
         }
         catch (IOException e)

Original file line number	Diff line number	Diff line change
`@@ -586,7 +586,6 @@ private boolean runUsingDocker(List<String> nimbleArgs, PipelineStepOutput outpu`
`586`	`586`	`dockerWriter.println(StringUtils.join(nimbleArgs, " "));`
`587`	`587`	`dockerWriter.println("EXIT_CODE=$?");`
`588`	`588`	`dockerWriter.println("echo 'Exit code: '$?");`
`589`		`- dockerWriter.println("ls /work");`
`590`	`589`	`dockerWriter.println("exit $EXIT_CODE");`
`591`	`590`	`}`
`592`	`591`	`catch (IOException e)`