Copy hashing HTML locally on QC failure

bbimber · bbimber · commit 8a18745b79b4 · 2023-11-25T07:37:22.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunCellHashing.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunCellHashing.java
@@ -152,6 +152,7 @@ else if (!params.h5File.exists())
                             String msg = "Hashing data contained HTOs with counts higher than those in the whitelist, this could indicate an error in the expected barcodes: " + line[2];
                             if (params.failIfUnexpectedHtosFound)
                             {
+                                CellHashingService.get().copyHtmlLocally(ctx);
                                 throw new PipelineJobException(msg);
                             }
                             else

Original file line number	Diff line number	Diff line change
`@@ -152,6 +152,7 @@ else if (!params.h5File.exists())`
`152`	`152`	`String msg = "Hashing data contained HTOs with counts higher than those in the whitelist, this could indicate an error in the expected barcodes: " + line[2];`
`153`	`153`	`if (params.failIfUnexpectedHtosFound)`
`154`	`154`	`{`
	`155`	`+ CellHashingService.get().copyHtmlLocally(ctx);`
`155`	`156`	`throw new PipelineJobException(msg);`
`156`	`157`	`}`
`157`	`158`	`else`