Skip to content

Commit 81fbf7a

Browse files
committed
Clarify parameter description
1 parent 0aa00f9 commit 81fbf7a

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/StarWrapper.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -436,7 +436,7 @@ public Provider()
436436
ToolParameterDescriptor.create(LONG_READS, "Reads >500bp", "If the reads are expected to exceed 500bp (per pair), this will use STARlong instead of STAR.", "checkbox", new JSONObject(){{
437437
put("checked", false);
438438
}}, false),
439-
ToolParameterDescriptor.create("sjdbGTFtagExonParentTranscript", "Exon Parent Transcript", "This is only required for GFF3 files. It is the annotation used to assign exons to transcripts. For GFF3 files this is usually Parent. It will be ignored if a GTF file is used.", "textfield", null, "Parent"),
439+
ToolParameterDescriptor.create("sjdbGTFtagExonParentTranscript", "Exon Parent Transcript", "This is only required for GFF3 files. It is the annotation used to assign exons to transcripts. For GFF3 files this is usually Parent. It will be ignored if a GTF file is used (since the default is transcript_id).", "textfield", null, "Parent"),
440440
ToolParameterDescriptor.create("addSAMStrandField", "Add SAM Strand Field", "If you have unstranded data and plan to use cufflinks, this should be checked. It will add the XS tag to the output BAM file.", "checkbox", new JSONObject(){{
441441
put("checked", false);
442442
}}, true),

0 commit comments

Comments
 (0)