Drop old argument

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/MultiAllelicPositionsHandler.java

@@ -125,13 +125,6 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c
                 options.add(minDepth.toString());
             }
 
-            Integer maxThreads = SequencePipelineService.get().getMaxThreads(ctx.getLogger());
-            if (maxThreads != null)
-            {
-                options.add("-nt");
-                options.add(maxThreads.toString());
-            }
-
             MultiAllelicPositionWrapper wrapper = new MultiAllelicPositionWrapper(ctx.getLogger());
             wrapper.run(inputBams, outputFile, rg.getWorkingFastaFile(), options);
             if (!outputFile.exists())