MCC request updates and allow cellranger vdj import to work when hashing is not used

Author: bbimber

singlecell/api-src/org/labkey/api/singlecell/CellHashingService.java

@@ -70,7 +70,7 @@ static public void setInstance(CellHashingService instance)
 
     abstract public List<ToolParameterDescriptor> getHashingCallingParams(boolean allowDemuxEm);
 
-    abstract public Set<String> getHtosForParentReadset(Integer parentReadsetId, File webserverJobDir, SequenceAnalysisJobSupport support) throws PipelineJobException;
+    abstract public Set<String> getHtosForParentReadset(Integer parentReadsetId, File webserverJobDir, SequenceAnalysisJobSupport support, boolean throwIfNotFound) throws PipelineJobException;
 
     abstract public File getExistingFeatureBarcodeCountDir(Readset parentReadset, BARCODE_TYPE type, SequenceAnalysisJobSupport support) throws PipelineJobException;
 

singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java

@@ -1317,11 +1317,6 @@ public File getExistingFeatureBarcodeCountDir(Readset parentReadset, BARCODE_TYP
     }
 
     @Override
-    public Set<String> getHtosForParentReadset(Integer parentReadsetId, File webserverJobDir, SequenceAnalysisJobSupport support) throws PipelineJobException
-    {
-        return getHtosForParentReadset(parentReadsetId, webserverJobDir, support, true);
-    }
-
     public Set<String> getHtosForParentReadset(Integer parentReadsetId, File webserverJobDir, SequenceAnalysisJobSupport support, boolean throwIfNotFound) throws PipelineJobException
     {
         Integer htoReadset = getCachedHashingReadsetMap(support).get(parentReadsetId);