Use correct method for list deserialization

bbimber · bbimber · commit 7396d6f1a9f4 · 2026-05-28T10:09:24.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/WhatsHapStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/WhatsHapStep.java
@@ -110,7 +110,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Seque
 
     private List<File> getCachedBams() throws PipelineJobException
     {
-        List<Long> cachedFiles = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructParametricType(List.class, Long.class));
+        List<Long> cachedFiles = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructCollectionType(List.class, Long.class));
 
         return cachedFiles.stream().map(x -> getPipelineCtx().getSequenceSupport().getCachedData(x)).toList();
     }

Original file line number	Diff line number	Diff line change
`@@ -110,7 +110,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Seque`
`110`	`110`
`111`	`111`	`private List<File> getCachedBams() throws PipelineJobException`
`112`	`112`	`{`
`113`		`- List<Long> cachedFiles = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructParametricType(List.class, Long.class));`
	`113`	`+ List<Long> cachedFiles = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructCollectionType(List.class, Long.class));`
`114`	`114`
`115`	`115`	`return cachedFiles.stream().map(x -> getPipelineCtx().getSequenceSupport().getCachedData(x)).toList();`
`116`	`116`	`}`