Drop SupportsPedigree in whatshap

bbimber · bbimber · commit 5106e7ebf913 · 2026-05-28T09:21:29.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/WhatsHapStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/WhatsHapStep.java
@@ -42,7 +42,7 @@ public WhatsHapStep(PipelineStepProvider<?> provider, PipelineContext ctx)
         super(provider, ctx, new WhatsHapStep.WhatsHapWrapper(ctx.getLogger()));
     }
 
-    public static class Provider extends AbstractVariantProcessingStepProvider<WhatsHapStep> implements SupportsPedigree
+    public static class Provider extends AbstractVariantProcessingStepProvider<WhatsHapStep>
     {
         public Provider()
         {

Original file line number	Diff line number	Diff line change
`@@ -42,7 +42,7 @@ public WhatsHapStep(PipelineStepProvider<?> provider, PipelineContext ctx)`
`42`	`42`	`super(provider, ctx, new WhatsHapStep.WhatsHapWrapper(ctx.getLogger()));`
`43`	`43`	`}`
`44`	`44`
`45`		`- public static class Provider extends AbstractVariantProcessingStepProvider<WhatsHapStep> implements SupportsPedigree`
	`45`	`+ public static class Provider extends AbstractVariantProcessingStepProvider<WhatsHapStep>`
`46`	`46`	`{`
`47`	`47`	`public Provider()`
`48`	`48`	`{`