Drop CS-Core and Tricycle

Author: bbimber

singlecell/resources/chunks/RunCsCore.R

@@ -87,7 +87,6 @@
 import org.labkey.singlecell.pipeline.singlecell.RunCelltypist;
 import org.labkey.singlecell.pipeline.singlecell.RunCelltypistCustomModel;
 import org.labkey.singlecell.pipeline.singlecell.RunConga;
-import org.labkey.singlecell.pipeline.singlecell.RunCsCore;
 import org.labkey.singlecell.pipeline.singlecell.RunDecoupler;
 import org.labkey.singlecell.pipeline.singlecell.RunEscape;
 import org.labkey.singlecell.pipeline.singlecell.RunLDA;
@@ -98,7 +97,6 @@
 import org.labkey.singlecell.pipeline.singlecell.RunScGate;
 import org.labkey.singlecell.pipeline.singlecell.RunScGateBuiltin;
 import org.labkey.singlecell.pipeline.singlecell.RunSingleR;
-import org.labkey.singlecell.pipeline.singlecell.RunTricycle;
 import org.labkey.singlecell.pipeline.singlecell.RunVision;
 import org.labkey.singlecell.pipeline.singlecell.ScoreCellCycle;
 import org.labkey.singlecell.pipeline.singlecell.SeuratPrototype;
@@ -295,14 +293,12 @@ public static void registerPipelineSteps()
         SequencePipelineService.get().registerPipelineStep(new TrainScTour.Provider());
         SequencePipelineService.get().registerPipelineStep(new PredictScTour.Provider());
         SequencePipelineService.get().registerPipelineStep(new RunEscape.Provider());
-        SequencePipelineService.get().registerPipelineStep(new RunCsCore.Provider());
         SequencePipelineService.get().registerPipelineStep(new CustomGSEA.Provider());
         SequencePipelineService.get().registerPipelineStep(new StudyMetadata.Provider());
         SequencePipelineService.get().registerPipelineStep(new UpdateSeuratPrototype.Provider());
         SequencePipelineService.get().registerPipelineStep(new RunDecoupler.Provider());
         SequencePipelineService.get().registerPipelineStep(new PerformDefaultNimbleAppend.Provider());
         SequencePipelineService.get().registerPipelineStep(new PerformMhcDimRedux.Provider());
-        SequencePipelineService.get().registerPipelineStep(new RunTricycle.Provider());
         SequencePipelineService.get().registerPipelineStep(new ApplyKnownClonotypicData.Provider());
         SequencePipelineService.get().registerPipelineStep(new CalculateTcrRepertoireStats.Provider());
         SequencePipelineService.get().registerPipelineStep(new PredictTcellActivation.Provider());