Do not force seurat object name to match readset

bbimber · bbimber · commit feba968c7998 · 2025-09-09T09:39:19.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/analysis/AbstractSingleCellHandler.java b/singlecell/src/org/labkey/singlecell/analysis/AbstractSingleCellHandler.java
@@ -401,6 +401,10 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c
                     {
                         datasetId = FileUtil.makeLegalName(ctx.getSequenceSupport().getCachedReadset(so.getReadset()).getName());
                     }
+                    else if (_doProcessRawCounts)
+                    {
+                        datasetId = FileUtil.makeLegalName(so.getReadset() == null ? so.getName() : ctx.getSequenceSupport().getCachedReadset(so.getReadset()).getName());
+                    }
                     else
                     {
                         datasetId = so.getName();

Original file line number	Diff line number	Diff line change
`@@ -401,6 +401,10 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c`
`401`	`401`	`{`
`402`	`402`	`datasetId = FileUtil.makeLegalName(ctx.getSequenceSupport().getCachedReadset(so.getReadset()).getName());`
`403`	`403`	`}`
	`404`	`+ else if (_doProcessRawCounts)`
	`405`	`+ {`
	`406`	`+ datasetId = FileUtil.makeLegalName(so.getReadset() == null ? so.getName() : ctx.getSequenceSupport().getCachedReadset(so.getReadset()).getName());`
	`407`	`+ }`
`404`	`408`	`else`
`405`	`409`	`{`
`406`	`410`	`datasetId = so.getName();`