Bugfix to CigarPositionIterable when operator is equal sign

bbimber · bbimber · commit 0a3827891566 · 2025-05-20T06:10:57.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/api/picard/CigarPositionIterable.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/api/picard/CigarPositionIterable.java
@@ -155,7 +155,7 @@ public PositionInfo(SAMRecord record, int pos, char[] ops, Integer[] readPos, In
         {
             _record = record;
             _pos = pos;
-            _op = CigarOperator.valueOf(Character.toString(ops[pos]));
+            _op = CigarOperator.characterToEnum(ops[pos]);
             _readPos = readPos[pos];
             _refPos = refPos[pos];
 

Original file line number	Diff line number	Diff line change
`@@ -155,7 +155,7 @@ public PositionInfo(SAMRecord record, int pos, char[] ops, Integer[] readPos, In`
`155`	`155`	`{`
`156`	`156`	`_record = record;`
`157`	`157`	`_pos = pos;`
`158`		`- _op = CigarOperator.valueOf(Character.toString(ops[pos]));`
	`158`	`+ _op = CigarOperator.characterToEnum(ops[pos]);`
`159`	`159`	`_readPos = readPos[pos];`
`160`	`160`	`_refPos = refPos[pos];`
`161`	`161`