Bugfix to CigarPositionIterable when operator is equal sign

bbimber · bbimber · commit bc8f6173e8e7 · 2025-05-19T20:50:33.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/api/picard/CigarPositionIterable.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/api/picard/CigarPositionIterable.java
@@ -81,7 +81,7 @@ private void initializeCigar()
             int i = 0;
             for (char el : _explodedCigar)
             {
-                CigarOperator op = CigarOperator.valueOf(Character.toString(el));
+                CigarOperator op = CigarOperator.characterToEnum(el);
                 if (op.consumesReadBases())
                 {
                     _readPositions[i] = readPos;

Original file line number	Diff line number	Diff line change
`@@ -81,7 +81,7 @@ private void initializeCigar()`
`81`	`81`	`int i = 0;`
`82`	`82`	`for (char el : _explodedCigar)`
`83`	`83`	`{`
`84`		`- CigarOperator op = CigarOperator.valueOf(Character.toString(el));`
	`84`	`+ CigarOperator op = CigarOperator.characterToEnum(el);`
`85`	`85`	`if (op.consumesReadBases())`
`86`	`86`	`{`
`87`	`87`	`_readPositions[i] = readPos;`