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1. IntroRstudio IntroRstudio Public

   Scripts for introduction to R stats

   R

2. PopulationStats PopulationStats Public

   Python

3. CHTC_Staging_Test CHTC_Staging_Test Public

   Scripts for learning how to use CHTC staging.

   Shell

4. Popoolation_Mtb Popoolation_Mtb Public

   Forked from topfm/poolER

   analysis of evolve and re-sequence populations

   Python

5. CHTC_RNAseq_HTSeqCounts_V2 CHTC_RNAseq_HTSeqCounts_V2 Public

   Forked from pepperell-lab/CHTC_RNAseq_HTSeqCounts

   Updated version replacing fastQC -> trimmomatic -> fastQC with fastp and adding in duplication marking and reporting,

   Shell

6. SlidingWindowCoverage_Mtb SlidingWindowCoverage_Mtb Public

   Updated scripts for finding sliding window coverage from Pepperell Lab, UW-Madison.

   Python