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Merged
zivy merged 2 commits into from
Feb 4, 2026
Merged

Propagate improved support for google colab. #499

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f37f500
Propagate improved support for google colab.
zivy Feb 3, 2026
3df818a
Update URLs to ITK documentation.
zivy Feb 4, 2026
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4 changes: 2 additions & 2 deletions Python/01_Image_Basics.ipynb
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Expand Up @@ -28,10 +28,10 @@
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"SimpleITK-Notebooks\")\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
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17 changes: 12 additions & 5 deletions Python/02_Pythonic_Image.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/03_Image_Details.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/04_Image_Display.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/05_Results_Visualization.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/10_matplotlibs_imshow.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/11_Progress.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
Expand Down
17 changes: 12 additions & 5 deletions Python/20_Expand_With_Interpolators.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/21_Transforms_and_Resampling.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/22_Transforms.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/300_Segmentation_Overview.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/30_Segmentation_Region_Growing.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/31_Levelset_Segmentation.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/32_Watersheds_Segmentation.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/33_Segmentation_Thresholding_Edge_Detection.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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17 changes: 12 additions & 5 deletions Python/34_Segmentation_Evaluation.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"/content/SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd /content/SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
Expand Down
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