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Merged
zivy merged 4 commits into from
Feb 3, 2026
Merged

colab: make setup cell more robust #498

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f6ae8b8
colab: make setup cell more robust
Masood-Akram Jan 31, 2026
cf2cac1
style: simplify colab setup block
Masood-Akram Feb 3, 2026
6a6eb88
Update black formatting of notebooks.
zivy Feb 3, 2026
52a2fcd
Removed flake8_nb directive from notebook.
zivy Feb 3, 2026
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15 changes: 11 additions & 4 deletions Python/01_Image_Basics.ipynb
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Expand Up @@ -23,12 +23,19 @@
"outputs": [],
"source": [
"# Setup to enable running the notebook in the Google Colab environment\n",
"import os\n",
"\n",
"if \"COLAB_NOTEBOOK_ID\" in os.environ:\n",
" !git clone https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
"try:\n",
" import google.colab\n",
" import pathlib\n",
"\n",
" repo_dir = pathlib.Path(\"SimpleITK-Notebooks\")\n",
" if not repo_dir.exists():\n",
" !git clone --depth 1 https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks\n",
" %cd SimpleITK-Notebooks/Python\n",
" !pip install -q -r requirements.txt"
" !pip install -q -r requirements.txt\n",
"\n",
"except ImportError:\n",
" pass # not on Colab"
]
},
{
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1 change: 0 additions & 1 deletion Python/36_Microscopy_Colocalization_Distance_Analysis.ipynb
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Expand Up @@ -25,7 +25,6 @@
"import numpy as np\n",
"import pandas as pd\n",
"\n",
"\n",
"%matplotlib widget\n",
"import gui\n",
"\n",
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1 change: 0 additions & 1 deletion Python/71_Trust_But_Verify.ipynb
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Expand Up @@ -75,7 +75,6 @@
"import matplotlib.pyplot as plt\n",
"import ipywidgets as widgets\n",
"\n",
"\n",
"# utility method that either downloads data from the Girder repository or\n",
"# if already downloaded returns the file name for reading from disk (cached data)\n",
"%run update_path_to_download_script\n",
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