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ForwardSimulation / design_playground Public

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Mutation "chunks"#7

Open

molpopgen wants to merge 72 commits intomainForwardSimulation/design_playground:mainfrom

genome_array_chunkedForwardSimulation/design_playground:genome_array_chunkedCopy head branch name to clipboard

Conversation Commits72 (72)Checks Files changed

Open

Mutation "chunks"#7
molpopgen wants to merge 72 commits intomainfrom
genome_array_chunked

Commits

Commits on Apr 15, 2024

some basic design
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committed
For a first pass, let's do chunks of 64 mutations
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Renaming
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some musings
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more musings
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baby steps to tests
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more about what we actually need
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more design notes
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some infrastructure
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on the wrong path, I think?
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thoughts on what and OO version could look like
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arrayref using std. yay
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some cool tricks. some terrible design
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some code re-use
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use Self::CHUNK_SIZE
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steps towards a working fn
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the borrow checker stops us.
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use indexes to get around the borrow checker
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ugh, maybe struct approach is simpler at first
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defeated by the borrow checker. More to come tomorrow...
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some notes
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strip to bare bones based on pencil + paper sketches
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Default
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some basic tets
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add is_empty
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copying one chunk into another
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tests passsing
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add to occupancy
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comment
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note for later
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Note
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basic position fetching
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dedup
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simplify
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cleanup
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FIXME fixed
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on a path to ruin here...
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getting somewhere
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test more complex cases
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more detailed tests
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failing test of single crossover
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notes on what we need.
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need mutability here, I think?
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start to work on checking if we need new chunk
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another todo
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do one todo
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fiddle with the error checking a bit
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and we are gettign the wrong answers from the previous loop...
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and we are gettign the wrong answers from the previous loop...
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split tests
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some more print help
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start to abstract out inner ops
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fix closure
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hit the borrow checker
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solve borrow checker
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baby steps
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outline next steps
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fmt
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lint
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update other internal stuff that will need to abstract later
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better todo msg
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better better msg
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fast path to passing tests
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fill final output
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rename
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add failing test
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cleanz
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cleanz
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better test setup, now failing as expected
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committed
start over, using Python prototype as guidance
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committed
We need the chunk length
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committed
start crossover fn
molpopgen
committed

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