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Adjust Pan external URL to match current site #1128

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Adjust Pan external URL to match current site #1128

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44 changes: 40 additions & 4 deletions modules/EnsEMBL/Web/SpeciesDefs.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -1784,10 +1784,46 @@ sub species_path {

if (exists $rev_lookup{$species}) {
my $prod_name = $rev_lookup{$species};
my $site = $pan_lookup->{$prod_name}{'division'};
if ($site ne $self->DIVISION) {
$site = 'www' if $site eq 'vertebrates';
$url = "https://${site}.ensembl.org/${species}";
my $this_site_division = $self->DIVISION;
my $species_division = $pan_lookup->{$prod_name}{'division'};

if ($species_division ne $this_site_division) {

# The ENSEMBL_SERVERNAME will not always have a server prefix.
# This is expected for live Ensembl sites and external sites (e.g. Gramene).
# In such cases, the URL will refer to the live site of the species division.
my $server_prefix;
if ($SiteDefs::ENSEMBL_SERVERNAME =~ /^(.+)-${this_site_division}\.ensembl\.org$/) {
$server_prefix = $1;
}

if ($species_division eq 'vertebrates') {

if ($server_prefix) {

# If prefix of this server matches the expected format of an
# archive, we assume the Vertebrates site is an archive.
if ($server_prefix =~ /^[A-Za-z]{3}[0-9]{4}$/) {
$server_prefix = "${server_prefix}.archive";
} # else { We preserve the prefix as-is. }

} else {
# By default, we link to the live Ensembl Vertebrates site.
$server_prefix = 'www';
}

} else {

if ($server_prefix) {
# This may be an NV archive site or staging site etc.
$server_prefix = "${server_prefix}-${species_division}";
} else {
# By default, we link to the live NV site.
$server_prefix = $species_division;
}
}

$url = "https://${server_prefix}.ensembl.org/${species}";
}
}
}
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