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{2023.06}[GCC/13.2.0] VSEARCH 2.30.0 #1114

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Merged
bedroge merged 3 commits into from
Jun 10, 2025
Merged

{2023.06}[GCC/13.2.0] VSEARCH 2.30.0 #1114

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a221bcc
{2023.06}[GCC/13.2.0] vsearch 2.30.0
mdehollander Jun 10, 2025
48ba8a3
add VSEARCH configure hook
bedroge Jun 10, 2025
ea24820
Update eb_hooks.py
bedroge Jun 10, 2025
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1 change: 1 addition & 0 deletions easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-5.1.0-2023b.yml
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Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
easyconfigs:
- buildenv-default-foss-2023b.eb
- VSEARCH-2.30.0-GCC-13.2.0.eb
13 changes: 13 additions & 0 deletions eb_hooks.py
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Original file line number Diff line number Diff line change
Expand Up @@ -600,6 +600,18 @@ def pre_configure_hook_score_p(self, *args, **kwargs):
raise EasyBuildError("Score-P-specific hook triggered for non-Score-P easyconfig?!")


def pre_configure_hook_vsearch(self, *args, **kwargs):
"""
Pre-configure hook for VSEARCH
- Workaround for a Zlib macro being renamed in Gentoo, see https://bugs.gentoo.org/383179
(solves "expected initializer before 'OF'" errors)
"""
if self.name == 'VSEARCH':
self.cfg.update('configopts', 'CPPFLAGS="-DOF=_Z_OF ${CPPFLAGS}"')
else:
raise EasyBuildError("VSEARCH-specific hook triggered for non-VSEARCH easyconfig?!")


def pre_configure_hook_extrae(self, *args, **kwargs):
"""
Pre-configure hook for Extrae
Expand Down Expand Up @@ -1286,6 +1298,7 @@ def post_module_hook(self, *args, **kwargs):
'WRF': pre_configure_hook_wrf_aarch64,
'LAMMPS': pre_configure_hook_LAMMPS_zen4,
'Score-P': pre_configure_hook_score_p,
'VSEARCH': pre_configure_hook_vsearch,
}

PRE_TEST_HOOKS = {
Expand Down