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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

61 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 63 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 69 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 90 40

Repositories

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All CSS Dockerfile HTML Java JavaScript Jinja Jupyter Notebook Makefile Python Ruby Shell TeX TypeScript Web Ontology Language

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Showing 10 of 76 repositories

oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 10 Updated Jun 1, 2026
gwas-sumstats-harmoniser Public
GWAS Summary Statistics Data Harmonisation

EBISPOT/gwas-sumstats-harmoniser’s past year of commit activity

Python 29 21 15 (1 issue needs help) 10 Updated Jun 1, 2026
cohort-ontology Public
A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

EBISPOT/cohort-ontology’s past year of commit activity

Makefile 2 CC0-1.0 0 0 0 Updated Jun 1, 2026
gwas-sumstats-tools Public
gwas-sumstats-tools

EBISPOT/gwas-sumstats-tools’s past year of commit activity

Python 12 Apache-2.0 1 3 4 Updated May 29, 2026
zooma2 Public

EBISPOT/zooma2’s past year of commit activity

Java 0 Apache-2.0 0 0 1 Updated May 29, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4’s past year of commit activity

Java 90 Apache-2.0 40 87 (1 issue needs help) 12 Updated May 29, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 63 15 195 (2 issues need help) 13 Updated May 28, 2026
gwas-blog Public
https://ebispot.github.io/gwas-blog

EBISPOT/gwas-blog’s past year of commit activity

CSS 0 0 0 16 Updated May 27, 2026
PEGASUS Public
Predicted effector gene standard

EBISPOT/PEGASUS’s past year of commit activity

TypeScript 1 0 0 9 Updated May 23, 2026
gwas-solr-slim Public

EBISPOT/gwas-solr-slim’s past year of commit activity

Python 1 0 3 3 Updated May 22, 2026

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