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27 changes: 0 additions & 27 deletions .github/actions/deploy-common/action.yaml

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23 changes: 0 additions & 23 deletions .github/workflows/deploy-cz.yaml

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21 changes: 0 additions & 21 deletions .github/workflows/deploy-dev.yaml

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41 changes: 0 additions & 41 deletions .github/workflows/qa1-complete-deploy.yaml

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21 changes: 21 additions & 0 deletions .github/workflows/qa1-infrastructure-deploy.yaml
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#! vim: ts=2 expandtab:

name: qa1-complete-deploy

# TODO: run automatically on push to main
on: [ workflow_dispatch ]

jobs:
call-common:
runs-on: ubuntu-latest
steps:
- name: Checkout actions
uses: actions/checkout@v3

- name: Call run-infrastructure-playbook action
uses: ./.github/actions/run-infrastructure-playbook
env:
TARGET_HOSTNAME: galaxy-qa1.galaxy.cloud.e-infra.cz
TARGET_USER: debian
VAULT_PASSWORD: ${{ secrets.VAULT_PASSWORD_QA1 }}
SSH_PRIVATE_KEY: ${{ secrets.SSH_PRIVATE_KEY_QA1 }}
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- type: dropbox
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we do not need unused file source config anymore

id: dropbox1
label: Dropbox files (configure access in user preferences)
doc: Your Dropbox files - configure an access token via the user preferences
access_token: ${user.preferences['dropbox|access_token']}
19 changes: 0 additions & 19 deletions files/galaxy-qa1.galaxy.cloud.e-infra.cz/tool_list.yaml
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@@ -1,23 +1,4 @@
tools:
- name: iedb_api
owner: iuc
revisions:
- 7ed6dda64a81
tool_panel_section_label: Get Data
tool_shed_url: toolshed.g2.bx.psu.edu
- name: dbbuilder
owner: galaxyp
revisions:
- 983bf725dfc2
tool_panel_section_label: Get Data
tool_shed_url: toolshed.g2.bx.psu.edu
- name: sra_tools
owner: iuc
revisions:
- 734abc7ac21d
- f5ea3ce9b9b0
tool_panel_section_label: Get Data
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastqc
owner: devteam
revisions:
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1 change: 1 addition & 0 deletions group_vars/all.yml
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Expand Up @@ -5,6 +5,7 @@ pip_virtualenv_command: /usr/bin/python3 -m venv # usegalaxy_eu.certbot, usegal
# Common variables needed by all hosts
galaxy_user_name: galaxy
galaxy_db_name: galaxy
galaxy_user_group_name: galaxy

# CVMFS vars
cvmfs_role: client
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