132 feature consider synthstrip brain extraction#150

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MarcelRosier merged 23 commits intomainfrom

132-feature-consider-synthstrip-brain-extraction

Jul 28, 2025

Commits on Jul 28, 2025

Remove pathlib dependency (include in stdlib as of python 3.10)
MarcelRosier
committed
Add synthstrip base package as optional dependency
MarcelRosier
committed
rm outdated todo comment
MarcelRosier
committed
WIP: synthstrip extractor
MarcelRosier
committed
Pass down use_gpu to bet method
MarcelRosier
committed
Remove unused params and fix pylance errors
MarcelRosier
committed
Handle device param and ad docstrings
MarcelRosier
committed
Add synthstrip to docs
MarcelRosier
committed
Generalize zenodo fetching
MarcelRosier
committed
Integrate updated zenodo fetching, rename synth class, type fixes
MarcelRosier
committed
Add bet weights
MarcelRosier
committed
Add synthstrip to all extras option
MarcelRosier
committed
Remove default import of optional synthstrip and add info to docstring
MarcelRosier
committed
Basic test suite for zenodo integration
MarcelRosier
committed
Fix latest folder logic bug
MarcelRosier
committed
Update registration and bet section
MarcelRosier
committed
Fix label name
MarcelRosier
committed
Add note that registrator is optional and provide install instructions
MarcelRosier
committed
Update brainles_preprocessing/brain_extraction/synthstrip.py

neuronflow
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Autoformat with black
brainless-bot[bot]
committed
Simplify exception mock
MarcelRosier
committed
Integrate comments
MarcelRosier
committed
Merge branch '132-feature-consider-synthstrip-brain-extraction' of github.com:BrainLesion/preprocessing into 132-feature-consider-synthstrip-brain-extraction
MarcelRosier
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132 feature consider synthstrip brain extraction#150

132 feature consider synthstrip brain extraction#150
MarcelRosier merged 23 commits intomainfrom
132-feature-consider-synthstrip-brain-extraction

Commits on Jul 28, 2025

Remove pathlib dependency (include in stdlib as of python 3.10)

Add synthstrip base package as optional dependency

rm outdated todo comment

WIP: synthstrip extractor

Pass down use_gpu to bet method

Remove unused params and fix pylance errors

Handle device param and ad docstrings

Add synthstrip to docs

Generalize zenodo fetching

Integrate updated zenodo fetching, rename synth class, type fixes

Add bet weights

Add synthstrip to all extras option

Remove default import of optional synthstrip and add info to docstring

Basic test suite for zenodo integration

Fix latest folder logic bug

Update registration and bet section

Fix label name

Add note that registrator is optional and provide install instructions

Update brainles_preprocessing/brain_extraction/synthstrip.py

Autoformat with black

Simplify exception mock

Integrate comments

Merge branch '132-feature-consider-synthstrip-brain-extraction' of github.com:BrainLesion/preprocessing into 132-feature-consider-synthstrip-brain-extraction

132 feature consider synthstrip brain extraction#150MarcelRosier merged 23 commits intomainBrainLesion/preprocessing:mainfrom 132-feature-consider-synthstrip-brain-extractionBrainLesion/preprocessing:132-feature-consider-synthstrip-brain-extractionCopy head branch name to clipboard

Commits

Commits on Jul 28, 2025

132 feature consider synthstrip brain extraction#150
MarcelRosier merged 23 commits intomainfrom
132-feature-consider-synthstrip-brain-extraction