Skip to content

feat/v1.1.0#28

Open
yousefkotp wants to merge 8 commits intomainfrom
feat/v1.1.0-slide-patient-encoders
Open

feat/v1.1.0#28
yousefkotp wants to merge 8 commits intomainfrom
feat/v1.1.0-slide-patient-encoders

Conversation

@yousefkotp
Copy link
Copy Markdown
Member

@yousefkotp yousefkotp commented Apr 6, 2026

  • Added encode-slide.
  • Added encode-patient.
  • process remains patch-only.
  • Added built-in slide encoders: titan, prism, moozy.
  • Added built-in patient encoder: moozy.
  • Patch features remain in patches/<stem>.h5 under features/<patch_encoder>.
  • Slide embeddings are written to slide_features/<slide_encoder> inside the per-slide H5.
  • Patient embeddings are written to patient_features/<encoder>/<case_id>.h5.
  • encode-slide reuses existing slide H5 files and computes missing required patch features when needed.
  • encode-patient reuses existing slide H5 files and computes missing required patch features when needed.
  • Added optional install extras:
    • atlas-patch[patch-encoders]
    • atlas-patch[titan]
    • atlas-patch[prism]
    • atlas-patch[moozy]
    • atlas-patch[slide-encoders]
    • atlas-patch[patient-encoders]

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant