RecursionError: maximum recursion depth exceeded

[rcarrmart]

Hello,

I ran into an error RecursionError: maximum recursion depth exceeded with a very large traceback. The error came after I tried to use QR to root a expanded species tree with ca. 450 terminal taxa and 80 gene trees. Gene trees do not all taxa present.

The code I used:

python3 ./bin/Quintet-Rooting/quintet_rooting.py -t ./Phylo/03_ASTRAL/Expanded.spp.tr \                           
                         -g ./Phylo/02_RAxML_out/All.Trees.support.trs   -o ./Phylo/03_ASTRAL/QR.rooted.spp.tr -c STAR

The traceback text is attached: error.txt

[ytabatabaee]

Dear Roberto,

Thank you for using the software. It appears that a DendroPy function used in QR can sometimes produce this error when gene trees have missing data. We are currently working on a fix for this issue.

Best,
Yasamin